Feature identity
- Identifier
- PaHa05g36760.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,557 bp
- Genomic location
- 5:86,019,396–86,022,807
- Strand
- −
Hass · mRNA
PaHa05g36760.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,557
- bp
- 5:86,019,396–86,022,807
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g36760
- eggNOG
- Preferred name: IRX12 | Seed ortholog: 337451.A0A3S3MXR1 | COG: COG2132 | eggNOG OG: Cu-oxidase@131567|A-1, Cu-oxidase@2759|v-6, Cu-oxidase@3193|AuY-20, Cu-oxidase@3398|COD-23!, Cu-oxidase@35493|Kt-12, Cu-oxidase_2@131567|z-6, Cu-oxidase_2@2759|HU-12, Cu-oxidase_2@3193|AFx-20, Cu-oxidase_2@3398|EHk-28, Cu-oxidase_3@131567|C-2!, Cu-oxidase_3@2759|Av-9, Cu-oxidase_3@3193|HzF-33, Cu-oxidase_3@3398|Ljx-38, Cu-oxidase_3@58023|KSo-36
- Gene Ontology
- GO:0005576 extracellular region; GO:0009505 plant-type cell wall; GO:0009809 lignin biosynthetic process; GO:0009834 plant-type secondary cell wall biogenesis; GO:0016491 oxidoreductase activity
- KEGG
- EC: ec:1.10.3.2 | KO: K05909 | Pathway: 00053, 01100 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g36760.1-protein
derives_frommRNAPaHa05g36760.1
mRNAPaHa05g36760.1
part_ofgenePaHa05g36760
CDS
part_ofPaHa05g36760.1-CDS-5-1787993825:86019396..86019526mRNAPaHa05g36760.1
CDS
part_ofPaHa05g36760.1-CDS-5-1787993825:86019754..86020015mRNAPaHa05g36760.1
CDS
part_ofPaHa05g36760.1-CDS-5-1787993825:86020155..86020687mRNAPaHa05g36760.1
CDS
part_ofPaHa05g36760.1-CDS-5-1787993825:86020799..86020942mRNAPaHa05g36760.1
CDS
part_ofPaHa05g36760.1-CDS-5-1787993825:86021402..86021646mRNAPaHa05g36760.1
CDS
part_ofPaHa05g36760.1-CDS-5-1787993825:86022012..86022163mRNAPaHa05g36760.1
CDS
part_ofPaHa05g36760.1-CDS-5-1787993825:86022718..86022807mRNAPaHa05g36760.1
exon
part_ofPaHa05g36760.1-exon-5-1787993825:86019396..86019526mRNAPaHa05g36760.1
exon
part_ofPaHa05g36760.1-exon-5-1787993825:86019754..86020015mRNAPaHa05g36760.1
exon
part_ofPaHa05g36760.1-exon-5-1787993825:86020155..86020687mRNAPaHa05g36760.1
exon
part_ofPaHa05g36760.1-exon-5-1787993825:86020799..86020942mRNAPaHa05g36760.1
exon
part_ofPaHa05g36760.1-exon-5-1787993825:86021402..86021646mRNAPaHa05g36760.1
exon
part_ofPaHa05g36760.1-exon-5-1787993825:86022012..86022163mRNAPaHa05g36760.1
exon
part_ofPaHa05g36760.1-exon-5-1787993825:86022718..86022807mRNAPaHa05g36760.1
