Feature identity
- Identifier
- PaHa05g34540.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 678 bp
- Genomic location
- 5:83,209,060–83,211,402
- Strand
- +
Hass · mRNA
PaHa05g34540.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 678
- bp
- 5:83,209,060–83,211,402
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g34540
- eggNOG
- Preferred name: MADS16 | Seed ortholog: 337451.A0A443NTC1 | COG: S | eggNOG OG: K-box@131567|A-1*, K-box@2759|B-2, K-box@3398|T-5, SRF-TF@131567|A-1*, SRF-TF@2759|C-2!, SRF-TF@3193|so-21, SRF-TF@3398|AqH-25, SRF-TF@35493|bP-19
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0010097 specification of stamen identity
- KEGG
- KO: K09264 | Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g34540.1-protein
derives_frommRNAPaHa05g34540.1
mRNAPaHa05g34540.1
part_ofgenePaHa05g34540
CDS
part_ofPaHa05g34540.1-CDS-5-1787993825:83209060..83209247mRNAPaHa05g34540.1
CDS
part_ofPaHa05g34540.1-CDS-5-1787993825:83209339..83209405mRNAPaHa05g34540.1
CDS
part_ofPaHa05g34540.1-CDS-5-1787993825:83209707..83209768mRNAPaHa05g34540.1
CDS
part_ofPaHa05g34540.1-CDS-5-1787993825:83209865..83209964mRNAPaHa05g34540.1
CDS
part_ofPaHa05g34540.1-CDS-5-1787993825:83210926..83210967mRNAPaHa05g34540.1
CDS
part_ofPaHa05g34540.1-CDS-5-1787993825:83211078..83211122mRNAPaHa05g34540.1
CDS
part_ofPaHa05g34540.1-CDS-5-1787993825:83211229..83211402mRNAPaHa05g34540.1
exon
part_ofPaHa05g34540.1-exon-5-1787993825:83209060..83209247mRNAPaHa05g34540.1
exon
part_ofPaHa05g34540.1-exon-5-1787993825:83209339..83209405mRNAPaHa05g34540.1
exon
part_ofPaHa05g34540.1-exon-5-1787993825:83209707..83209768mRNAPaHa05g34540.1
exon
part_ofPaHa05g34540.1-exon-5-1787993825:83209865..83209964mRNAPaHa05g34540.1
exon
part_ofPaHa05g34540.1-exon-5-1787993825:83210926..83210967mRNAPaHa05g34540.1
exon
part_ofPaHa05g34540.1-exon-5-1787993825:83211078..83211122mRNAPaHa05g34540.1
exon
part_ofPaHa05g34540.1-exon-5-1787993825:83211229..83211402mRNAPaHa05g34540.1
