Feature identity
- Identifier
- PaHa05g34500.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 828 bp
- Genomic location
- 5:83,122,831–83,123,883
- Strand
- +
Hass · mRNA
PaHa05g34500.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 828
- bp
- 5:83,122,831–83,123,883
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g34500
- eggNOG
- Preferred name: LOC104602018 | Seed ortholog: 337451.A0A3S3MY41 | COG: S | eggNOG OG: zf-B_box@2759|B-2!, zf-B_box@33090|l-7, zf-B_box@3398|Wb-18, zf-B_box@35493|CD-11
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009641 shade avoidance; GO:0009741 response to brassinosteroid; GO:0010117 photoprotection; GO:1900458 negative regulation of brassinosteroid mediated signaling pathway; GO:1905157 positive regulation of photosynthesis; GO:2000306 positive regulation of photomorphogenesis
- KEGG
- KO: K12135 | Pathway: 04712 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g34500.1-protein
derives_frommRNAPaHa05g34500.1
mRNAPaHa05g34500.1
part_ofgenePaHa05g34500
CDS
part_ofPaHa05g34500.1-CDS-5-1787993825:83122831..83123016mRNAPaHa05g34500.1
CDS
part_ofPaHa05g34500.1-CDS-5-1787993825:83123135..83123506mRNAPaHa05g34500.1
CDS
part_ofPaHa05g34500.1-CDS-5-1787993825:83123614..83123883mRNAPaHa05g34500.1
exon
part_ofPaHa05g34500.1-exon-5-1787993825:83122831..83123016mRNAPaHa05g34500.1
exon
part_ofPaHa05g34500.1-exon-5-1787993825:83123135..83123506mRNAPaHa05g34500.1
exon
part_ofPaHa05g34500.1-exon-5-1787993825:83123614..83123883mRNAPaHa05g34500.1
