Feature identity
- Identifier
- PaHa05g31930.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,059 bp
- Genomic location
- 5:78,845,589–78,847,426
- Strand
- −
Hass · mRNA
PaHa05g31930.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,059
- bp
- 5:78,845,589–78,847,426
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g31930
- eggNOG
- Preferred name: APL | Seed ortholog: 337451.A0A443NTW6 | COG: S | eggNOG OG: Myb_CC_LHEQLE@131567|A-1*, Myb_CC_LHEQLE@3193|Z-8, Myb_CC_LHEQLE@33090|S-7, Myb_CC_LHEQLE@3398|AR-11, Myb_DNA-binding@131567|dl-20, Myb_DNA-binding@2759|pK-22, Myb_DNA-binding@3193|Bsq-33, Myb_DNA-binding@33090|Apr-30, Myb_DNA-binding@3398|CRL-34
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005739 mitochondrion; GO:0006355 regulation of DNA-templated transcription; GO:0010088 phloem development; GO:0010089 xylem development; GO:0045893 positive regulation of DNA-templated transcription
- KEGG
- EC: ec:6.3.4.5 | KO: K01940 | Pathway: 00220, 00250, 01100, 01110, 01230 | Module: M00029, M00844, M00845, M00978 | BRITE: 00001, 01000, 04147
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g31930.1-protein
derives_frommRNAPaHa05g31930.1
mRNAPaHa05g31930.1
part_ofgenePaHa05g31930
CDS
part_ofPaHa05g31930.1-CDS-5-1787993825:78845589..78846206mRNAPaHa05g31930.1
CDS
part_ofPaHa05g31930.1-CDS-5-1787993825:78846299..78846371mRNAPaHa05g31930.1
CDS
part_ofPaHa05g31930.1-CDS-5-1787993825:78846631..78846697mRNAPaHa05g31930.1
CDS
part_ofPaHa05g31930.1-CDS-5-1787993825:78846804..78846861mRNAPaHa05g31930.1
CDS
part_ofPaHa05g31930.1-CDS-5-1787993825:78847059..78847135mRNAPaHa05g31930.1
CDS
part_ofPaHa05g31930.1-CDS-5-1787993825:78847261..78847426mRNAPaHa05g31930.1
exon
part_ofPaHa05g31930.1-exon-5-1787993825:78845589..78846206mRNAPaHa05g31930.1
exon
part_ofPaHa05g31930.1-exon-5-1787993825:78846299..78846371mRNAPaHa05g31930.1
exon
part_ofPaHa05g31930.1-exon-5-1787993825:78846631..78846697mRNAPaHa05g31930.1
exon
part_ofPaHa05g31930.1-exon-5-1787993825:78846804..78846861mRNAPaHa05g31930.1
exon
part_ofPaHa05g31930.1-exon-5-1787993825:78847059..78847135mRNAPaHa05g31930.1
exon
part_ofPaHa05g31930.1-exon-5-1787993825:78847261..78847426mRNAPaHa05g31930.1
