Feature identity
- Identifier
- PaHa05g31110.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 3,438 bp
- Genomic location
- 5:77,725,720–77,746,170
- Strand
- −
Hass · mRNA
PaHa05g31110.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 3,438
- bp
- 5:77,725,720–77,746,170
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g31110
- eggNOG
- Preferred name: LOC110797633 | Seed ortholog: 337451.A0A3S3ME99 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AHp-26, Myb_DNA-binding@2759|BJn-31
- Gene Ontology
- GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000995 RNA polymerase III general transcription initiation factor activity; GO:0001006 RNA polymerase III type 3 promoter sequence-specific DNA binding; GO:0003677 DNA binding; GO:0003681 bent DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0006383 transcription by RNA polymerase III; GO:0008150 biological_process; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0019185 snRNA-activating protein complex; GO:0031016 pancreas development; GO:0035622 intrahepatic bile duct development; GO:0042795 snRNA transcription by RNA polymerase II; GO:0042796 snRNA transcription by RNA polymerase III; GO:0043565 sequence-specific DNA binding; GO:0065004 protein-DNA complex assembly
- KEGG
- KO: K09422 | Pathway: 03040 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g31110.1-protein
derives_frommRNAPaHa05g31110.1
mRNAPaHa05g31110.1
part_ofgenePaHa05g31110
CDS
part_ofPaHa05g31110.1-CDS-5-1787993825:77725720..77727100mRNAPaHa05g31110.1
CDS
part_ofPaHa05g31110.1-CDS-5-1787993825:77728677..77728886mRNAPaHa05g31110.1
CDS
part_ofPaHa05g31110.1-CDS-5-1787993825:77729970..77730119mRNAPaHa05g31110.1
CDS
part_ofPaHa05g31110.1-CDS-5-1787993825:77730421..77730579mRNAPaHa05g31110.1
CDS
part_ofPaHa05g31110.1-CDS-5-1787993825:77734692..77735006mRNAPaHa05g31110.1
CDS
part_ofPaHa05g31110.1-CDS-5-1787993825:77737229..77737399mRNAPaHa05g31110.1
CDS
part_ofPaHa05g31110.1-CDS-5-1787993825:77737506..77737705mRNAPaHa05g31110.1
CDS
part_ofPaHa05g31110.1-CDS-5-1787993825:77740156..77740658mRNAPaHa05g31110.1
CDS
part_ofPaHa05g31110.1-CDS-5-1787993825:77745822..77746170mRNAPaHa05g31110.1
exon
part_ofPaHa05g31110.1-exon-5-1787993825:77725720..77727100mRNAPaHa05g31110.1
exon
part_ofPaHa05g31110.1-exon-5-1787993825:77728677..77728886mRNAPaHa05g31110.1
exon
part_ofPaHa05g31110.1-exon-5-1787993825:77729970..77730119mRNAPaHa05g31110.1
exon
part_ofPaHa05g31110.1-exon-5-1787993825:77730421..77730579mRNAPaHa05g31110.1
exon
part_ofPaHa05g31110.1-exon-5-1787993825:77734692..77735006mRNAPaHa05g31110.1
exon
part_ofPaHa05g31110.1-exon-5-1787993825:77737229..77737399mRNAPaHa05g31110.1
exon
part_ofPaHa05g31110.1-exon-5-1787993825:77737506..77737705mRNAPaHa05g31110.1
exon
part_ofPaHa05g31110.1-exon-5-1787993825:77740156..77740658mRNAPaHa05g31110.1
exon
part_ofPaHa05g31110.1-exon-5-1787993825:77745822..77746170mRNAPaHa05g31110.1
