West Indian T2T · gene

Pa05g2144

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

7,028
bp
Pa05:57,914,929–57,921,956
genomic location
Record overview

Feature identity

Identifier
Pa05g2144
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
7,028 bp
Genomic location
Pa05:57,914,929–57,921,956
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: JMJ30 | Seed ortholog: 337451.A0A443NWF4 | COG: S | eggNOG OG: Cupin_8@131567|CB-9, Cupin_8@2759|Dx-11
Gene Ontology
GO:0000791 euchromatin; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005783 endoplasmic reticulum; GO:0007623 circadian rhythm; GO:0009266 response to temperature stimulus; GO:0009737 response to abscisic acid; GO:0009741 response to brassinosteroid; GO:0009787 regulation of abscisic acid-activated signaling pathway; GO:0010378 temperature compensation of the circadian clock; GO:0010468 regulation of gene expression; GO:0040029 epigenetic regulation of gene expression; GO:0042752 regulation of circadian rhythm; GO:0043565 sequence-specific DNA binding; GO:0045814 negative regulation of gene expression, epigenetic; GO:0046975 histone H3K36 methyltransferase activity; GO:0061628 histone H3K27me3 reader activity; GO:0071558 histone H3K27me2/H3K27me3 demethylase activity; GO:0080022 primary root development; GO:0140680 histone H3K36me/H3K36me2 demethylase activity; GO:0140681 histone H3K36me2/H3K36me3 demethylase activity; GO:0140684 histone H3K9me2/H3K9me3 demethylase activity; GO:1900140 regulation of seedling development; GO:1900457 regulation of brassinosteroid mediated signaling pathway; GO:1990110 callus formation; GO:2000028 regulation of photoperiodism, flowering
KEGG
EC: ec:1.14.11.27 | KO: K24444 | BRITE: 00001, 01000, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.