Hass · mRNA

PaHa05g30510.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,356
bp
5:77,003,267–77,006,709
genomic location
Record overview

Feature identity

Identifier
PaHa05g30510.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,356 bp
Genomic location
5:77,003,267–77,006,709
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC102719768 | Seed ortholog: 337451.A0A3S3N7A1 | COG: S | eggNOG OG: Transferase@131567|C-2!, Transferase@3193|Gs-11, Transferase@3398|yO-19
Gene Ontology
GO:0000325 plant-type vacuole; GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005783 endoplasmic reticulum; GO:0005829 cytosol; GO:0006805 xenobiotic metabolic process; GO:0008150 biological_process; GO:0009507 chloroplast; GO:0009535 chloroplast thylakoid membrane; GO:0009555 pollen development; GO:0009617 response to bacterium; GO:0009636 response to toxic substance; GO:0009697 salicylic acid biosynthetic process; GO:0009718 anthocyanin-containing compound biosynthetic process; GO:0009753 response to jasmonic acid; GO:0009809 lignin biosynthetic process; GO:0009963 positive regulation of flavonoid biosynthetic process; GO:0010025 wax biosynthetic process; GO:0010090 trichome morphogenesis; GO:0010143 cutin biosynthetic process; GO:0010584 pollen exine formation; GO:0016020 membrane; GO:0016420 malonyltransferase activity; GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups; GO:0019631 quinate catabolic process; GO:0019633 shikimate catabolic process; GO:0042761 very long-chain fatty acid biosynthetic process; GO:0047165 flavonol-3-O-beta-glucoside O-malonyltransferase activity; GO:0047172 shikimate O-hydroxycinnamoyltransferase activity; GO:0047205 quinate O-hydroxycinnamoyltransferase activity; GO:0047634 agmatine N4-coumaroyltransferase activity; GO:0050734 hydroxycinnamoyltransferase activity; GO:0050736 O-malonyltransferase activity; GO:0080072 spermidine:sinapoyl CoA N-acyltransferase activity; GO:0080073 spermidine:coumaroyl CoA N-acyltransferase activity; GO:0080074 spermidine:caffeoyl CoA N-acyltransferase activity; GO:0080075 spermidine:feruloyl CoA N-acyltransferase activity; GO:0080088 spermidine hydroxycinnamate conjugate biosynthetic process; GO:0090626 plant epidermis morphogenesis; GO:0102585 cyanidin 3-O-[2''-O-(xylosyl)-6''-O-(p-coumaroyl) glucoside] 5-O-glucoside malonyltransferase activity; GO:1900150 regulation of defense response to fungus; GO:1900424 regulation of defense response to bacterium
KEGG
EC: ec:2.3.1.196, ec:2.3.1.232 | KO: K19861 | Pathway: 00330, 00350, 00940, 00941, 00942, 00943, 00944, 00945, 00999, 01100, 01110 | Module: M00039 | BRITE: 00001, 01000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa05g30510.1-CDS-5-1787993825:77003267..77004184
part_of
CDSPaHa05g30510.1-CDS-5-1787993825:77006272..77006709
part_of
exonPaHa05g30510.1-exon-5-1787993825:77003267..77004184
part_of
exonPaHa05g30510.1-exon-5-1787993825:77006272..77006709
part_of