West Indian T2T · gene

Pa05g1471

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

24,899
bp
Pa05:46,662,216–46,687,114
genomic location
Record overview

Feature identity

Identifier
Pa05g1471
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
24,899 bp
Genomic location
Pa05:46,662,216–46,687,114
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC107782542 | Seed ortholog: 337451.A0A443NXS4 | COG: S | eggNOG OG: RRM_1@131567|PG-17, RRM_1@2759|YF-19
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000278 mitotic cell cycle; GO:0000380 alternative mRNA splicing, via spliceosome; GO:0000381 regulation of alternative mRNA splicing, via spliceosome; GO:0000398 mRNA splicing, via spliceosome; GO:0000724 double-strand break repair via homologous recombination; GO:0000785 chromatin; GO:0000976 transcription cis-regulatory region binding; GO:0001510 RNA methylation; GO:0001569 branching involved in blood vessel morphogenesis; GO:0001650 fibrillar center; GO:0001889 liver development; GO:0002190 cap-independent translational initiation; GO:0002192 IRES-dependent translational initiation of linear mRNA; GO:0002218 activation of innate immune response; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003697 single-stranded DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003713 transcription coactivator activity; GO:0003714 transcription corepressor activity; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005635 nuclear envelope; GO:0005654 nucleoplasm; GO:0005667 transcription regulator complex; GO:0005694 chromosome; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006338 chromatin remodeling; GO:0006396 RNA processing; GO:0006397 mRNA processing; GO:0006406 mRNA export from nucleus; GO:0006417 regulation of translation; GO:0006915 apoptotic process; GO:0006974 DNA damage response; GO:0007221 positive regulation of transcription of Notch receptor target; GO:0007283 spermatogenesis; GO:0007300 ovarian nurse cell to oocyte transport; GO:0007369 gastrulation; GO:0007417 central nervous system development; GO:0007420 brain development; GO:0007548 sex differentiation; GO:0007562 eclosion; GO:0007623 circadian rhythm; GO:0008062 eclosion rhythm; GO:0008104 intracellular protein localization; GO:0008150 biological_process; GO:0008298 intracellular mRNA localization; GO:0008380 RNA splicing; GO:0009048 dosage compensation by inactivation of X chromosome; GO:0009725 response to hormone; GO:0009792 embryo development ending in birth or egg hatching; GO:0010468 regulation of gene expression; GO:0010494 cytoplasmic stress granule; GO:0010628 positive regulation of gene expression; GO:0016020 membrane; GO:0016363 nuclear matrix; GO:0016607 nuclear speck; GO:0017053 transcription repressor complex; GO:0017148 negative regulation of translation; GO:0021522 spinal cord motor neuron differentiation; GO:0021547 midbrain-hindbrain boundary initiation; GO:0021591 ventricular system development; GO:0021654 rhombomere boundary formation; GO:0021955 central nervous system neuron axonogenesis; GO:0030036 actin cytoskeleton organization; GO:0030332 cyclin binding; GO:0031016 pancreas development; GO:0031048 regulatory ncRNA-mediated heterochromatin formation; GO:0031965 nuclear membrane; GO:0032055 negative regulation of translation in response to stress; GO:0032922 circadian regulation of gene expression; GO:0032991 protein-containing complex; GO:0035198 miRNA binding; GO:0035222 wing disc pattern formation; GO:0035278 miRNA-mediated gene silencing by inhibition of translation; GO:0035773 insulin secretion involved in cellular response to glucose stimulus; GO:0035883 enteroendocrine cell differentiation; GO:0036002 pre-mRNA binding; GO:0036396 RNA N6-methyladenosine methyltransferase complex; GO:0038163 thrombopoietin-mediated signaling pathway; GO:0042382 paraspeckles; GO:0042593 glucose homeostasis; GO:0042752 regulation of circadian rhythm; GO:0042754 negative regulation of circadian rhythm; GO:0042802 identical protein binding; GO:0042803 protein homodimerization activity; GO:0042826 histone deacetylase binding; GO:0043005 neuron projection; GO:0043066 negative regulation of apoptotic process; GO:0043153 entrainment of circadian clock by photoperiod; GO:0045475 locomotor rhythm; GO:0045638 negative regulation of myeloid cell differentiation; GO:0045652 regulation of megakaryocyte differentiation; GO:0045727 positive regulation of translation; GO:0045804 negative regulation of eclosion; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0045876 positive regulation of sister chromatid cohesion; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0045947 negative regulation of translational initiation; GO:0045995 regulation of embryonic development; GO:0046600 negative regulation of centriole replication; GO:0046626 regulation of insulin receptor signaling pathway; GO:0046685 response to arsenic-containing substance; GO:0046822 regulation of nucleocytoplasmic transport; GO:0048471 perinuclear region of cytoplasm; GO:0048536 spleen development; GO:0048600 oocyte fate commitment; GO:0048681 negative regulation of axon regeneration; GO:0048749 compound eye development; GO:0048859 formation of anatomical boundary; GO:0050684 regulation of mRNA processing; GO:0050769 positive regulation of neurogenesis; GO:0051149 positive regulation of muscle cell differentiation; GO:0051276 chromosome organization; GO:0051726 regulation of cell cycle; GO:0060047 heart contraction; GO:0060282 positive regulation of oocyte development; GO:0060412 ventricular septum morphogenesis; GO:0060674 placenta blood vessel development; GO:0060816 random inactivation of X chromosome; GO:0061053 somite development; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0070062 extracellular exosome; GO:0071011 precatalytic spliceosome; GO:0071013 catalytic step 2 spliceosome; GO:0071456 cellular response to hypoxia; GO:0071599 otic vesicle development; GO:0090263 positive regulation of canonical Wnt signaling pathway; GO:0090575 RNA polymerase II transcription regulator complex; GO:0097157 pre-mRNA intronic binding; GO:0097158 pre-mRNA intronic pyrimidine-rich binding; GO:0097167 circadian regulation of translation; GO:0098534 centriole assembly; GO:0098963 dendritic transport of messenger ribonucleoprotein complex; GO:0106222 lncRNA binding; GO:0140694 membraneless organelle assembly; GO:1902151 regulation of response to DNA integrity checkpoint signaling; GO:1902177 positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway; GO:1903377 negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway; GO:1904385 cellular response to angiotensin; GO:1990904 ribonucleoprotein complex; GO:1990935 splicing factor binding; GO:2000737 negative regulation of stem cell differentiation; GO:2000767 positive regulation of cytoplasmic translation
KEGG
KO: K24824 | Pathway: 04330 | BRITE: 00001, 03041
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.