Feature identity
- Identifier
- Pa05g1441
- Feature type
- gene
- Genome collection
- West Indian T2T
- Organism
- Persea americana-West Indian
- Sequence length
- 345 bp
- Genomic location
- Pa05:46,093,703–46,094,047
- Strand
- −
West Indian T2T · gene
Pa05g1441
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 345
- bp
- Pa05:46,093,703–46,094,047
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
- eggNOG
- Preferred name: COL2 | Seed ortholog: 337451.A0A3S3P5C2 | COG: S | eggNOG OG: CCT@131567|A-1*, CCT@1437183|hz-18, CCT@2759|Bq-8, CCT@33090|DK-9, CCT@35493|ME-13, zf-B_box@1437183|fy-19, zf-B_box@2759|B-2!, zf-B_box@35493|Hj-14
- Gene Ontology
- GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0007623 circadian rhythm; GO:0008270 zinc ion binding; GO:0009658 chloroplast organization; GO:0009908 flower development; GO:0009909 regulation of flower development; GO:0010018 far-red light signaling pathway; GO:0010218 response to far red light; GO:0042802 identical protein binding; GO:0045892 negative regulation of DNA-templated transcription; GO:0048571 long-day photoperiodism; GO:0048572 short-day photoperiodism; GO:0048576 positive regulation of short-day photoperiodism, flowering; GO:0048577 negative regulation of short-day photoperiodism, flowering; GO:0048579 negative regulation of long-day photoperiodism, flowering
- KEGG
- KO: K12135 | Pathway: 04712 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
mRNAPa05g1441.1
part_ofgenePa05g1441
