West Indian T2T · gene

Pa04g2326

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,333
bp
Pa04:48,782,504–48,785,836
genomic location
Record overview

Feature identity

Identifier
Pa04g2326
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
3,333 bp
Genomic location
Pa04:48,782,504–48,785,836
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: 25498670 | Seed ortholog: 42345.A0A2H3ZER3 | COG: COG1996 | eggNOG OG: DNA_RNApol_7kD@131567|A-1
Gene Ontology
GO:0000418 RNA polymerase IV complex; GO:0001650 fibrillar center; GO:0003700 DNA-binding transcription factor activity; GO:0003899 DNA-directed RNA polymerase activity; GO:0003968 RNA-directed RNA polymerase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005665 RNA polymerase II, core complex; GO:0005666 RNA polymerase III complex; GO:0005730 nucleolus; GO:0005736 RNA polymerase I complex; GO:0005737 cytoplasm; GO:0005777 peroxisome; GO:0005829 cytosol; GO:0006351 DNA-templated transcription; GO:0006356 regulation of transcription by RNA polymerase I; GO:0006360 transcription by RNA polymerase I; GO:0006361 transcription initiation at RNA polymerase I promoter; GO:0006362 transcription elongation by RNA polymerase I; GO:0006363 termination of RNA polymerase I transcription; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0006368 transcription elongation by RNA polymerase II; GO:0006383 transcription by RNA polymerase III; GO:0006384 transcription initiation at RNA polymerase III promoter; GO:0006386 termination of RNA polymerase III transcription; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0009860 pollen tube growth; GO:0042790 nucleolar large rRNA transcription by RNA polymerase I; GO:0042797 tRNA transcription by RNA polymerase III
KEGG
KO: K03009 | Pathway: 03020, 03420 | BRITE: 00001, 01611, 03021, 03400
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.