West Indian T2T · gene

Pa04g1575

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,745
bp
Pa04:35,306,845–35,308,589
genomic location
Record overview

Feature identity

Identifier
Pa04g1575
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,745 bp
Genomic location
Pa04:35,306,845–35,308,589
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: ATX1 | Seed ortholog: 337451.A0A443PJH9 | COG: S | eggNOG OG: PHD@131567|A-1*, PHD@2759|PC-12!, zf-HC5HC2H_2@131567|A-1*, zf-HC5HC2H_2@2759|Lv-13
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000381 regulation of alternative mRNA splicing, via spliceosome; GO:0000785 chromatin; GO:0000791 euchromatin; GO:0000792 heterochromatin; GO:0000793 condensed chromosome; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0001889 liver development; GO:0002040 sprouting angiogenesis; GO:0002088 lens development in camera-type eye; GO:0002168 instar larval development; GO:0003676 nucleic acid binding; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0004402 histone acetyltransferase activity; GO:0004842 ubiquitin-protein transferase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005657 replication fork; GO:0005694 chromosome; GO:0005721 pericentric heterochromatin; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006366 transcription by RNA polymerase II; GO:0006397 mRNA processing; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0006954 inflammatory response; GO:0007482 haltere development; GO:0007526 larval somatic muscle development; GO:0007591 molting cycle, chitin-based cuticle; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0008327 methyl-CpG binding; GO:0009294 DNA-mediated transformation; GO:0009408 response to heat; GO:0009506 plasmodesma; GO:0010286 heat acclimation; GO:0010385 double-stranded methylated DNA binding; GO:0010628 positive regulation of gene expression; GO:0016020 membrane; GO:0016363 nuclear matrix; GO:0016567 protein ubiquitination; GO:0016925 protein sumoylation; GO:0019789 SUMO transferase activity; GO:0019904 protein domain specific binding; GO:0030154 cell differentiation; GO:0031011 Ino80 complex; GO:0031100 animal organ regeneration; GO:0031490 chromatin DNA binding; GO:0031491 nucleosome binding; GO:0031507 heterochromatin formation; GO:0032991 protein-containing complex; GO:0035097 histone methyltransferase complex; GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing; GO:0040029 epigenetic regulation of gene expression; GO:0042393 histone binding; GO:0042802 identical protein binding; GO:0043434 response to peptide hormone; GO:0043993 histone H3K18 acetyltransferase activity; GO:0044027 negative regulation of gene expression via chromosomal CpG island methylation; GO:0044729 hemi-methylated DNA-binding; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046827 positive regulation of protein export from nucleus; GO:0048188 Set1C/COMPASS complex; GO:0050678 regulation of epithelial cell proliferation; GO:0051247 positive regulation of protein metabolic process; GO:0051726 regulation of cell cycle; GO:0051865 protein autoubiquitination; GO:0060070 canonical Wnt signaling pathway; GO:0060729 intestinal epithelial structure maintenance; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0061630 ubiquitin protein ligase activity; GO:0061665 SUMO ligase activity; GO:0062072 histone H3K9me2/3 reader activity; GO:0070063 RNA polymerase binding; GO:0071168 protein localization to chromatin; GO:0080188 gene silencing by siRNA-directed DNA methylation; GO:0090307 mitotic spindle assembly; GO:0140006 histone H3 reader activity; GO:0140234 histone H3K23 ubiquitin ligase activity; GO:0140248 histone H3K18 ubiquitin ligase activity; GO:0140851 histone H3K14 ubiquitin ligase activity; GO:0141055 histone H3 ubiquitin ligase activity; GO:0141119 chromosomal DNA methylation maintenance following DNA replication; GO:1900036 positive regulation of cellular response to heat; GO:1990841 promoter-specific chromatin binding
KEGG
EC: ec:2.1.1.354, ec:2.3.2.27, ec:2.7.4.14, ec:3.1.3.16 | KO: K11380 | Pathway: 00240, 00310, 01100, 01232, 01240, 03022, 03082 | Module: M00052 | BRITE: 00001, 03036
Biological context

Connected feature records

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