Hass · mRNA

PaHa05g27320.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

888
bp
5:71,947,858–71,962,387
genomic location
Record overview

Feature identity

Identifier
PaHa05g27320.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
888 bp
Genomic location
5:71,947,858–71,962,387
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: TEF-C | Seed ortholog: 337451.A0A3S3MTY6 | COG: S | eggNOG OG: GTP_EFTU@131567|Ah-10, GTP_EFTU_D2@131567|W-5, GTP_EFTU_D2@2759|Ct-9, GTP_EFTU_D3@131567|F-3, GTP_EFTU_D3@2759|q-6
Gene Ontology
GO:0000082 G1/S transition of mitotic cell cycle; GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; GO:0000287 magnesium ion binding; GO:0001944 vasculature development; GO:0002184 cytoplasmic translational termination; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0003746 translation elongation factor activity; GO:0003747 translation release factor activity; GO:0003924 GTPase activity; GO:0005515 protein binding; GO:0005525 GTP binding; GO:0005575 cellular_component; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005853 eukaryotic translation elongation factor 1 complex; GO:0006412 translation; GO:0006414 translational elongation; GO:0006415 translational termination; GO:0006449 regulation of translational termination; GO:0006479 protein methylation; GO:0008079 translation termination factor activity; GO:0010608 post-transcriptional regulation of gene expression; GO:0018444 translation release factor complex; GO:0022626 cytosolic ribosome; GO:0032790 ribosome disassembly; GO:0033554 cellular response to stress; GO:0097014 ciliary plasm
KEGG
KO: K03267 | Pathway: 03015 | BRITE: 00001, 03012, 03019
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa05g27320.1-CDS-5-1787993825:71947858..71947887
part_of
CDSPaHa05g27320.1-CDS-5-1787993825:71948682..71948745
part_of
CDSPaHa05g27320.1-CDS-5-1787993825:71948837..71948991
part_of
CDSPaHa05g27320.1-CDS-5-1787993825:71949115..71949177
part_of
CDSPaHa05g27320.1-CDS-5-1787993825:71952287..71952358
part_of
CDSPaHa05g27320.1-CDS-5-1787993825:71953981..71954023
part_of
CDSPaHa05g27320.1-CDS-5-1787993825:71958308..71958463
part_of
CDSPaHa05g27320.1-CDS-5-1787993825:71958567..71958669
part_of
CDSPaHa05g27320.1-CDS-5-1787993825:71958828..71958881
part_of
CDSPaHa05g27320.1-CDS-5-1787993825:71962240..71962387
part_of
exonPaHa05g27320.1-exon-5-1787993825:71947858..71947887
part_of
exonPaHa05g27320.1-exon-5-1787993825:71948682..71948745
part_of
exonPaHa05g27320.1-exon-5-1787993825:71948837..71948991
part_of
exonPaHa05g27320.1-exon-5-1787993825:71949115..71949177
part_of
exonPaHa05g27320.1-exon-5-1787993825:71952287..71952358
part_of
exonPaHa05g27320.1-exon-5-1787993825:71953981..71954023
part_of
exonPaHa05g27320.1-exon-5-1787993825:71958308..71958463
part_of
exonPaHa05g27320.1-exon-5-1787993825:71958567..71958669
part_of
exonPaHa05g27320.1-exon-5-1787993825:71958828..71958881
part_of
exonPaHa05g27320.1-exon-5-1787993825:71962240..71962387
part_of