Feature identity
- Identifier
- PaHa05g27190.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 396 bp
- Genomic location
- 5:71,809,306–71,809,895
- Strand
- +
Hass · mRNA
PaHa05g27190.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 396
- bp
- 5:71,809,306–71,809,895
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g27190
- eggNOG
- Preferred name: HACL | Seed ortholog: 337451.A0A3S3NFA4 | COG: COG0028 | eggNOG OG: TPP_enzyme_C@131567|XE-15, TPP_enzyme_M@131567|F-3, TPP_enzyme_N@131567|r-6
- Gene Ontology
- GO:0001561 fatty acid alpha-oxidation; GO:0005777 peroxisome; GO:0005829 cytosol; GO:0009507 chloroplast; GO:0009536 plastid; GO:0033306 phytol metabolic process; GO:0106359 2-hydroxyacyl-CoA lyase activity; GO:0106376 2-hydroxyphytanoyl-CoA lyase activity
- KEGG
- EC: ec:4.1.2.63 | KO: K12261 | Pathway: 04146 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g27190.1-protein
derives_frommRNAPaHa05g27190.1
mRNAPaHa05g27190.1
part_ofgenePaHa05g27190
CDS
part_ofPaHa05g27190.1-CDS-5-1787993825:71809306..71809428mRNAPaHa05g27190.1
CDS
part_ofPaHa05g27190.1-CDS-5-1787993825:71809623..71809895mRNAPaHa05g27190.1
exon
part_ofPaHa05g27190.1-exon-5-1787993825:71809306..71809428mRNAPaHa05g27190.1
exon
part_ofPaHa05g27190.1-exon-5-1787993825:71809623..71809895mRNAPaHa05g27190.1
