West Indian T2T · gene

Pa04g0922

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,072
bp
Pa04:11,417,115–11,419,186
genomic location
Record overview

Feature identity

Identifier
Pa04g0922
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
2,072 bp
Genomic location
Pa04:11,417,115–11,419,186
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC110790669 | Seed ortholog: 337451.A0A3S3MLS7 | COG: S | eggNOG OG: MAT1@2759|A-1
Gene Ontology
GO:0000082 G1/S transition of mitotic cell cycle; GO:0000112 nucleotide-excision repair factor 3 complex; GO:0000307 cyclin-dependent protein kinase holoenzyme complex; GO:0000439 transcription factor TFIIH core complex; GO:0000993 RNA polymerase II complex binding; GO:0001174 transcriptional start site selection at RNA polymerase II promoter; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005675 transcription factor TFIIH holo complex; GO:0005694 chromosome; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006289 nucleotide-excision repair; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0007512 adult heart development; GO:0008270 zinc ion binding; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0021591 ventricular system development; GO:0032147 activation of protein kinase activity; GO:0032806 carboxy-terminal domain protein kinase complex; GO:0042585 germinal vesicle; GO:0043066 negative regulation of apoptotic process; GO:0043539 protein serine/threonine kinase activator activity; GO:0048661 positive regulation of smooth muscle cell proliferation; GO:0051592 response to calcium ion; GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity; GO:0061630 ubiquitin protein ligase activity; GO:0070516 CAK-ERCC2 complex; GO:0070985 transcription factor TFIIK complex; GO:2000045 regulation of G1/S transition of mitotic cell cycle
KEGG
KO: K10842 | Pathway: 03022, 03420 | BRITE: 00001, 03021, 03400
Biological context

Connected feature records

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