Feature identity
- Identifier
- PaHa05g25140.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,230 bp
- Genomic location
- 5:68,416,333–68,422,170
- Strand
- −
Hass · mRNA
PaHa05g25140.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,230
- bp
- 5:68,416,333–68,422,170
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g25140
- eggNOG
- Preferred name: COL9 | Seed ortholog: 337451.A0A3S3MF99 | COG: S | eggNOG OG: CCT@131567|A-1*, CCT@2759|t-6, CCT@3193|Ga-11, CCT@3398|Oi-14
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0007623 circadian rhythm; GO:0048579 negative regulation of long-day photoperiodism, flowering
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g25140.1-protein
derives_frommRNAPaHa05g25140.1
mRNAPaHa05g25140.1
part_ofgenePaHa05g25140
CDS
part_ofPaHa05g25140.1-CDS-5-1787993825:68416333..68416462mRNAPaHa05g25140.1
CDS
part_ofPaHa05g25140.1-CDS-5-1787993825:68417566..68417885mRNAPaHa05g25140.1
CDS
part_ofPaHa05g25140.1-CDS-5-1787993825:68419783..68419983mRNAPaHa05g25140.1
CDS
part_ofPaHa05g25140.1-CDS-5-1787993825:68421592..68422170mRNAPaHa05g25140.1
exon
part_ofPaHa05g25140.1-exon-5-1787993825:68416333..68416462mRNAPaHa05g25140.1
exon
part_ofPaHa05g25140.1-exon-5-1787993825:68417566..68417885mRNAPaHa05g25140.1
exon
part_ofPaHa05g25140.1-exon-5-1787993825:68419783..68419983mRNAPaHa05g25140.1
exon
part_ofPaHa05g25140.1-exon-5-1787993825:68421592..68422170mRNAPaHa05g25140.1
