Feature identity
- Identifier
- PaHa05g24330.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 459 bp
- Genomic location
- 5:67,386,318–67,389,157
- Strand
- −
Hass · mRNA
PaHa05g24330.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 459
- bp
- 5:67,386,318–67,389,157
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g24330
- eggNOG
- Preferred name: ARF12 | Seed ortholog: 4577.A0A1D6DTV9 | COG: S | eggNOG OG: AUX_IAA@131567|A-1*, AUX_IAA@147369|CDK-36, AUX_IAA@2759|AW-7, AUX_IAA@3193|xW-20, AUX_IAA@3398|Aet-24, Auxin_resp@131221|y-7, Auxin_resp@131567|A-1*, Auxin_resp@1437197|XT-19, Auxin_resp@147369|ALv-25, Auxin_resp@2759|O-4, Auxin_resp@3193|Aa-8, Auxin_resp@3398|Ch-11, B3@131221|yd-19, B3@131567|A-1*, B3@3193|AqU-23, B3@33090|Id-12, B3@3398|BOY-25
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009733 response to auxin; GO:0009908 flower development; GO:0010154 fruit development
- KEGG
- KO: K14486 | Pathway: 04075 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g24330.1-protein
derives_frommRNAPaHa05g24330.1
mRNAPaHa05g24330.1
part_ofgenePaHa05g24330
CDS
part_ofPaHa05g24330.1-CDS-5-1787993825:67386318..67386336mRNAPaHa05g24330.1
CDS
part_ofPaHa05g24330.1-CDS-5-1787993825:67386517..67386681mRNAPaHa05g24330.1
CDS
part_ofPaHa05g24330.1-CDS-5-1787993825:67386849..67386892mRNAPaHa05g24330.1
CDS
part_ofPaHa05g24330.1-CDS-5-1787993825:67388827..67389001mRNAPaHa05g24330.1
CDS
part_ofPaHa05g24330.1-CDS-5-1787993825:67389102..67389157mRNAPaHa05g24330.1
exon
part_ofPaHa05g24330.1-exon-5-1787993825:67386318..67386336mRNAPaHa05g24330.1
exon
part_ofPaHa05g24330.1-exon-5-1787993825:67386517..67386681mRNAPaHa05g24330.1
exon
part_ofPaHa05g24330.1-exon-5-1787993825:67386849..67386892mRNAPaHa05g24330.1
exon
part_ofPaHa05g24330.1-exon-5-1787993825:67388827..67389001mRNAPaHa05g24330.1
exon
part_ofPaHa05g24330.1-exon-5-1787993825:67389102..67389157mRNAPaHa05g24330.1
