West Indian T2T · gene

Pa03g2763

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

15,387
bp
Pa03:67,766,424–67,781,810
genomic location
Record overview

Feature identity

Identifier
Pa03g2763
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
15,387 bp
Genomic location
Pa03:67,766,424–67,781,810
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC107772659 | Seed ortholog: 337451.A0A3S3NCI9 | eggNOG OG: Arm@131567|MQ-16
Gene Ontology
GO:0000018 regulation of DNA recombination; GO:0000139 Golgi membrane; GO:0001674 female germ cell nucleus; GO:0001824 blastocyst development; GO:0002088 lens development in camera-type eye; GO:0002119 nematode larval development; GO:0003674 molecular_function; GO:0003723 RNA binding; GO:0005112 Notch binding; GO:0005515 protein binding; GO:0005525 GTP binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005635 nuclear envelope; GO:0005643 nuclear pore; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005819 spindle; GO:0005829 cytosol; GO:0006259 DNA metabolic process; GO:0006606 protein import into nucleus; GO:0006607 NLS-bearing protein import into nucleus; GO:0006612 protein targeting to membrane; GO:0006886 intracellular protein transport; GO:0006913 nucleocytoplasmic transport; GO:0006952 defense response; GO:0006999 nuclear pore organization; GO:0007084 mitotic nuclear membrane reassembly; GO:0007127 meiosis I; GO:0007276 gamete generation; GO:0007283 spermatogenesis; GO:0007291 sperm individualization; GO:0007292 female gamete generation; GO:0007301 female germline ring canal formation; GO:0008150 biological_process; GO:0008361 regulation of cell size; GO:0009505 plant-type cell wall; GO:0009506 plasmodesma; GO:0009651 response to salt stress; GO:0009792 embryo development ending in birth or egg hatching; GO:0010467 gene expression; GO:0010494 cytoplasmic stress granule; GO:0010628 positive regulation of gene expression; GO:0010629 negative regulation of gene expression; GO:0014046 dopamine secretion; GO:0014069 postsynaptic density; GO:0014841 skeletal muscle satellite cell proliferation; GO:0014901 satellite cell activation involved in skeletal muscle regeneration; GO:0016020 membrane; GO:0017022 myosin binding; GO:0019079 viral genome replication; GO:0019904 protein domain specific binding; GO:0030425 dendrite; GO:0030581 symbiont intracellular protein transport in host; GO:0030682 symbiont-mediated perturbation of host defenses; GO:0031144 proteasome localization; GO:0031965 nuclear membrane; GO:0032481 positive regulation of type I interferon production; GO:0032991 protein-containing complex; GO:0034399 nuclear periphery; GO:0035332 positive regulation of hippo signaling; GO:0038061 non-canonical NF-kappaB signal transduction; GO:0040029 epigenetic regulation of gene expression; GO:0042332 gravitaxis; GO:0042542 response to hydrogen peroxide; GO:0042564 NLS-dependent protein nuclear import complex; GO:0042826 histone deacetylase binding; GO:0042981 regulation of apoptotic process; GO:0043403 skeletal muscle tissue regeneration; GO:0044877 protein-containing complex binding; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046015 regulation of transcription by glucose; GO:0046982 protein heterodimerization activity; GO:0048235 pollen sperm cell differentiation; GO:0048477 oogenesis; GO:0048542 lymph gland development; GO:0048691 positive regulation of axon extension involved in regeneration; GO:0051170 import into nucleus; GO:0051177 meiotic sister chromatid cohesion; GO:0051983 regulation of chromosome segregation; GO:0060135 maternal process involved in female pregnancy; GO:0060828 regulation of canonical Wnt signaling pathway; GO:0061608 nuclear import signal receptor activity; GO:0061675 RBL family protein binding; GO:0065003 protein-containing complex assembly; GO:0071555 cell wall organization; GO:0075506 entry of viral genome into host nucleus through nuclear pore complex via importin; GO:0080034 host response to induction by symbiont of tumor, nodule or growth in host; GO:0097718 disordered domain specific binding; GO:0098978 glutamatergic synapse; GO:0099527 postsynapse to nucleus signaling pathway; GO:0140142 nucleocytoplasmic carrier activity; GO:0140297 DNA-binding transcription factor binding; GO:0140516 mitotic nuclear pore complex disassembly; GO:1900017 positive regulation of cytokine production involved in inflammatory response; GO:1903902 positive regulation of viral life cycle; GO:1905557 regulation of mitotic nuclear envelope disassembly; GO:2000280 regulation of root development
KEGG
KO: K14550, K15042, K15043, K23583, K23940, K24124, K24812 | Pathway: 03008, 03013, 05132, 05164, 05207 | BRITE: 00001, 03009, 03036, 03037, 04990
Biological context

Connected feature records

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