West Indian T2T · gene

Pa03g1790

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

49,202
bp
Pa03:48,917,157–48,966,358
genomic location
Record overview

Feature identity

Identifier
Pa03g1790
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
49,202 bp
Genomic location
Pa03:48,917,157–48,966,358
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: ARF2, LOC113461213 | Seed ortholog: 337451.A0A3S3N668, 337451.A0A443N3M7 | COG: S | eggNOG OG: AUX_IAA@131567|A-1*, AUX_IAA@2759|AW-7, AUX_IAA@3193|qd-19, AUX_IAA@3398|Auy-26, Auxin_resp@131567|A-1*, Auxin_resp@2759|N-4, Auxin_resp@3398|CF-11, DUF659@131567|A-1*, DUF659@2759|Iw-13, DUF659@3193|ZP-17, DUF659@3398|eG-18, Dimer_Tnp_hAT@131567|B-2, Dimer_Tnp_hAT@33090|Ii-12, Dimer_Tnp_hAT@3398|ALj-18, zf-BED@131567|Bq-8, zf-BED@1437183|ANn-22, zf-BED@3398|AHF-21
Gene Ontology
GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0008285 negative regulation of cell population proliferation; GO:0009737 response to abscisic acid; GO:0009835 fruit ripening; GO:0009836 fruit ripening, climacteric; GO:0009911 positive regulation of flower development; GO:0010047 fruit dehiscence; GO:0010150 leaf senescence; GO:0010227 floral organ abscission; GO:0042803 protein homodimerization activity; GO:0043565 sequence-specific DNA binding; GO:0045892 negative regulation of DNA-templated transcription; GO:0046982 protein heterodimerization activity; GO:0048481 plant ovule development; GO:1903288 positive regulation of potassium ion import across plasma membrane
KEGG
EC: ec:3.4.22.68 | KO: K08592, K14486 | Pathway: 04075 | BRITE: 00001, 01000, 01002, 04121
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.