Feature identity
- Identifier
- PaHa05g22810.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,929 bp
- Genomic location
- 5:65,059,806–65,070,154
- Strand
- −
Hass · mRNA
PaHa05g22810.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,929
- bp
- 5:65,059,806–65,070,154
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g22810
- eggNOG
- Preferred name: SSRP1 | Seed ortholog: 337451.A0A3S3NMJ5 | COG: S | eggNOG OG: HMG_box@131567|Aj-7, HMG_box@2759|Og-14, POB3_N@131567|A-1, Rtt106@131567|A-1*, Rtt106@2759|b-5, SSrecog@2759|A-1
- Gene Ontology
- GO:0000741 karyogamy; GO:0000791 euchromatin; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0010197 polar nucleus fusion; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0035101 FACT complex
- KEGG
- EC: ec:2.1.1.354 | KO: K09272 | Pathway: 00310, 01100 | BRITE: 00001, 03000, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g22810.1-protein
derives_frommRNAPaHa05g22810.1
mRNAPaHa05g22810.1
part_ofgenePaHa05g22810
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65059806..65059930mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65061505..65061583mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65061913..65062092mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65062527..65062625mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65062716..65062863mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65062954..65063102mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65063251..65063448mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65064446..65064538mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65064631..65064717mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65064951..65065059mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65065187..65065281mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65065360..65065443mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65066228..65066364mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65067794..65067899mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65069209..65069394mRNAPaHa05g22810.1
CDS
part_ofPaHa05g22810.1-CDS-5-1787993825:65070101..65070154mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65059806..65059930mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65061505..65061583mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65061913..65062092mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65062527..65062625mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65062716..65062863mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65062954..65063102mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65063251..65063448mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65064446..65064538mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65064631..65064717mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65064951..65065059mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65065187..65065281mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65065360..65065443mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65066228..65066364mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65067794..65067899mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65069209..65069394mRNAPaHa05g22810.1
exon
part_ofPaHa05g22810.1-exon-5-1787993825:65070101..65070154mRNAPaHa05g22810.1
