West Indian T2T · gene

Pa03g1304

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

18,785
bp
Pa03:23,895,519–23,914,303
genomic location
Record overview

Feature identity

Identifier
Pa03g1304
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
18,785 bp
Genomic location
Pa03:23,895,519–23,914,303
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: MBD9 | Seed ortholog: 337451.A0A3S3MWF3 | COG: S | eggNOG OG: DDT@131567|C-2, DDT@3193|DF-10, PHD@131567|A-1*, PHD@2759|N-4, PHD@3193|At-7, PHD@35493|AD-6
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000976 transcription cis-regulatory region binding; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0002039 p53 binding; GO:0004402 histone acetyltransferase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006366 transcription by RNA polymerase II; GO:0009294 DNA-mediated transformation; GO:0010385 double-stranded methylated DNA binding; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0021999 neural plate anterior/posterior regionalization; GO:0030097 hemopoiesis; GO:0031010 ISWI-type complex; GO:0040029 epigenetic regulation of gene expression; GO:0042393 histone binding; GO:0042789 mRNA transcription by RNA polymerase II; GO:0043993 histone H3K18 acetyltransferase activity; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048634 regulation of muscle organ development; GO:0051123 RNA polymerase II preinitiation complex assembly; GO:0051457 maintenance of protein location in nucleus; GO:0060261 positive regulation of transcription initiation by RNA polymerase II; GO:0080188 gene silencing by siRNA-directed DNA methylation; GO:0140002 histone H3K4me3 reader activity; GO:0140416 transcription regulator inhibitor activity; GO:0140751 histone octamer slider activity; GO:1901797 negative regulation of signal transduction by p53 class mediator; GO:1904888 cranial skeletal system development
KEGG
KO: K11728, K12778, K14650, K17586, K25830 | Pathway: 03022, 03082, 04113 | BRITE: 00001, 01009, 03021, 03036
Biological context

Connected feature records

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