West Indian T2T · gene

Pa03g0919

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

21,114
bp
Pa03:14,170,059–14,191,172
genomic location
Record overview

Feature identity

Identifier
Pa03g0919
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
21,114 bp
Genomic location
Pa03:14,170,059–14,191,172
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104590136, LOC110785004 | Seed ortholog: 337451.A0A3S3NAW1, 337451.A0A443NBI9 | COG: COG0553, S | eggNOG OG: HIRAN@131567|KZ-16, Helicase_C|7YVK5T@131567, Helicase_C|7YVK5T@2759, SMC_Nse1@2759|A-1, SNF2-rel_dom@131567|Ce-9!, SNF2-rel_dom@2759|DXw-28, zf-C3HC4@131567|d-5, zf-C3HC4@2759|Hs-12, zf-RING-like@2759|A-1
Gene Ontology
GO:0000113 nucleotide-excision repair factor 4 complex; GO:0000209 protein polyubiquitination; GO:0000724 double-strand break repair via homologous recombination; GO:0000775 chromosome, centromeric region; GO:0000781 chromosome, telomeric region; GO:0000785 chromatin; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003690 double-stranded DNA binding; GO:0003697 single-stranded DNA binding; GO:0003723 RNA binding; GO:0004842 ubiquitin-protein transferase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005886 plasma membrane; GO:0006281 DNA repair; GO:0006301 DNA damage tolerance; GO:0006974 DNA damage response; GO:0007127 meiosis I; GO:0008094 ATP-dependent activity, acting on DNA; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0009411 response to UV; GO:0009941 chloroplast envelope; GO:0015616 DNA translocase activity; GO:0016020 membrane; GO:0016363 nuclear matrix; GO:0016567 protein ubiquitination; GO:0016887 ATP hydrolysis activity; GO:0016925 protein sumoylation; GO:0019789 SUMO transferase activity; GO:0019985 translesion synthesis; GO:0030587 sorocarp development; GO:0030915 Smc5-Smc6 complex; GO:0031625 ubiquitin protein ligase binding; GO:0032204 regulation of telomere maintenance; GO:0042275 error-free postreplication DNA repair; GO:0042789 mRNA transcription by RNA polymerase II; GO:0043596 nuclear replication fork; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046983 protein dimerization activity; GO:0050767 regulation of neurogenesis; GO:0061630 ubiquitin protein ligase activity; GO:0062072 histone H3K9me2/3 reader activity; GO:0070534 protein K63-linked ubiquitination; GO:0071168 protein localization to chromatin; GO:0071932 replication fork reversal; GO:0090575 RNA polymerase II transcription regulator complex; GO:0097431 mitotic spindle pole; GO:0140234 histone H3K23 ubiquitin ligase activity; GO:0140588 chromatin looping; GO:0140658 ATP-dependent chromatin remodeler activity; GO:0141119 chromosomal DNA methylation maintenance following DNA replication; GO:0160225 G-quadruplex unwinding activity
KEGG
EC: ec:2.3.2.27 | KO: K15711, K22817 | Pathway: 04141 | BRITE: 00001, 01000, 03400, 04121
Biological context

Connected feature records

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