Feature identity
- Identifier
- PaHa05g20840.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 648 bp
- Genomic location
- 5:62,239,186–62,245,079
- Strand
- +
Hass · mRNA
PaHa05g20840.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 648
- bp
- 5:62,239,186–62,245,079
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g20840
- eggNOG
- Preferred name: GATA15 | Seed ortholog: 4555.A0A368QF95 | COG: S | eggNOG OG: GATA@131567|A-1*, GATA@1437197|Vj-16, GATA@2759|x-6, GATA@3398|Hh-13
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0042803 protein homodimerization activity; GO:0043565 sequence-specific DNA binding; GO:0048437 floral organ development; GO:0048510 regulation of timing of transition from vegetative to reproductive phase
- KEGG
- KO: K09184, K11648, K11770, K14972, K18658, K21630 | Pathway: 03082, 03250 | BRITE: 00001, 01009, 03000, 03019, 03021, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g20840.1-protein
derives_frommRNAPaHa05g20840.1
mRNAPaHa05g20840.1
part_ofgenePaHa05g20840
CDS
part_ofPaHa05g20840.1-CDS-5-1787993825:62239186..62239398mRNAPaHa05g20840.1
CDS
part_ofPaHa05g20840.1-CDS-5-1787993825:62242685..62242987mRNAPaHa05g20840.1
CDS
part_ofPaHa05g20840.1-CDS-5-1787993825:62244948..62245079mRNAPaHa05g20840.1
exon
part_ofPaHa05g20840.1-exon-5-1787993825:62239186..62239398mRNAPaHa05g20840.1
exon
part_ofPaHa05g20840.1-exon-5-1787993825:62242685..62242987mRNAPaHa05g20840.1
exon
part_ofPaHa05g20840.1-exon-5-1787993825:62244948..62245079mRNAPaHa05g20840.1
