Feature identity
- Identifier
- PaHa05g20100.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,220 bp
- Genomic location
- 5:59,778,362–59,791,447
- Strand
- +
Hass · mRNA
PaHa05g20100.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,220
- bp
- 5:59,778,362–59,791,447
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g20100
- eggNOG
- Preferred name: ANT | Seed ortholog: 337451.A0A3S3N094 | COG: S | eggNOG OG: AP2@131567|Eo-12, AP2@3193|Aps-24, AP2@33090|Xs-18, AP2@3398|GkU-33
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0007276 gamete generation; GO:0010492 maintenance of shoot apical meristem identity; GO:0010601 positive regulation of auxin biosynthetic process; GO:0019760 glucosinolate metabolic process; GO:0042127 regulation of cell population proliferation; GO:0048830 adventitious root development; GO:0051301 cell division; GO:0080037 negative regulation of cytokinin-activated signaling pathway; GO:1905392 plant organ morphogenesis
- KEGG
- KO: K09285 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g20100.1-protein
derives_frommRNAPaHa05g20100.1
mRNAPaHa05g20100.1
part_ofgenePaHa05g20100
CDS
part_ofPaHa05g20100.1-CDS-5-1787993825:59778362..59778629mRNAPaHa05g20100.1
CDS
part_ofPaHa05g20100.1-CDS-5-1787993825:59787905..59788135mRNAPaHa05g20100.1
CDS
part_ofPaHa05g20100.1-CDS-5-1787993825:59788264..59788948mRNAPaHa05g20100.1
CDS
part_ofPaHa05g20100.1-CDS-5-1787993825:59789257..59789339mRNAPaHa05g20100.1
CDS
part_ofPaHa05g20100.1-CDS-5-1787993825:59789487..59789495mRNAPaHa05g20100.1
CDS
part_ofPaHa05g20100.1-CDS-5-1787993825:59789589..59789677mRNAPaHa05g20100.1
CDS
part_ofPaHa05g20100.1-CDS-5-1787993825:59789782..59789855mRNAPaHa05g20100.1
CDS
part_ofPaHa05g20100.1-CDS-5-1787993825:59789951..59790001mRNAPaHa05g20100.1
CDS
part_ofPaHa05g20100.1-CDS-5-1787993825:59790091..59790167mRNAPaHa05g20100.1
CDS
part_ofPaHa05g20100.1-CDS-5-1787993825:59790795..59791447mRNAPaHa05g20100.1
exon
part_ofPaHa05g20100.1-exon-5-1787993825:59778362..59778629mRNAPaHa05g20100.1
exon
part_ofPaHa05g20100.1-exon-5-1787993825:59787905..59788135mRNAPaHa05g20100.1
exon
part_ofPaHa05g20100.1-exon-5-1787993825:59788264..59788948mRNAPaHa05g20100.1
exon
part_ofPaHa05g20100.1-exon-5-1787993825:59789257..59789339mRNAPaHa05g20100.1
exon
part_ofPaHa05g20100.1-exon-5-1787993825:59789487..59789495mRNAPaHa05g20100.1
exon
part_ofPaHa05g20100.1-exon-5-1787993825:59789589..59789677mRNAPaHa05g20100.1
exon
part_ofPaHa05g20100.1-exon-5-1787993825:59789782..59789855mRNAPaHa05g20100.1
exon
part_ofPaHa05g20100.1-exon-5-1787993825:59789951..59790001mRNAPaHa05g20100.1
exon
part_ofPaHa05g20100.1-exon-5-1787993825:59790091..59790167mRNAPaHa05g20100.1
exon
part_ofPaHa05g20100.1-exon-5-1787993825:59790795..59791447mRNAPaHa05g20100.1
