West Indian T2T · gene

Pa02g2952

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,773
bp
Pa02:75,345,790–75,349,562
genomic location
Record overview

Feature identity

Identifier
Pa02g2952
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
3,773 bp
Genomic location
Pa02:75,345,790–75,349,562
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104611895 | Seed ortholog: 337451.A0A443N5G8 | COG: S | eggNOG OG: WD40@131567|AiW-19, WD40@3398|dqN-36
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0001501 skeletal system development; GO:0001654 eye development; GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0007482 haltere development; GO:0007507 heart development; GO:0008150 biological_process; GO:0008340 determination of adult lifespan; GO:0012501 programmed cell death; GO:0018022 peptidyl-lysine methylation; GO:0031175 neuron projection development; GO:0031509 subtelomeric heterochromatin formation; GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process; GO:0032968 positive regulation of transcription elongation by RNA polymerase II; GO:0042393 histone binding; GO:0042800 histone H3K4 methyltransferase activity; GO:0045722 positive regulation of gluconeogenesis; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0045995 regulation of embryonic development; GO:0051302 regulation of cell division; GO:0051726 regulation of cell cycle; GO:0060290 transdifferentiation; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0080008 Cul4-RING E3 ubiquitin ligase complex; GO:0090043 regulation of tubulin deacetylation; GO:0140004 histone H3Q5ser reader activity; GO:0140109 histone H3K4me1 reader activity
KEGG
KO: K14963 | Pathway: 03083 | BRITE: 00001, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.