Feature identity
- Identifier
- PaHa05g18820.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,578 bp
- Genomic location
- 5:58,024,699–58,027,247
- Strand
- −
Hass · mRNA
PaHa05g18820.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,578
- bp
- 5:58,024,699–58,027,247
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g18820
- eggNOG
- Preferred name: AP2 | Seed ortholog: 337451.A0A443NWZ0 | COG: S | eggNOG OG: AP2@131567|Eo-12, AP2@33090|Xr-18, AP2@58023|AYo-23
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005667 transcription regulator complex; GO:0006355 regulation of DNA-templated transcription; GO:0009409 response to cold; GO:0009908 flower development; GO:0009909 regulation of flower development; GO:0010073 meristem maintenance; GO:0010093 specification of floral organ identity; GO:0010227 floral organ abscission; GO:0030154 cell differentiation; GO:0048316 seed development; GO:0048460 flower formation; GO:0048461 flower structural organization; GO:0048481 plant ovule development; GO:0060860 regulation of floral organ abscission; GO:0080050 regulation of seed development; GO:0080187 floral organ senescence; GO:0097548 seed abscission
- KEGG
- KO: K09284 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g18820.1-protein
derives_frommRNAPaHa05g18820.1
mRNAPaHa05g18820.1
part_ofgenePaHa05g18820
CDS
part_ofPaHa05g18820.1-CDS-5-1787993825:58024699..58025202mRNAPaHa05g18820.1
CDS
part_ofPaHa05g18820.1-CDS-5-1787993825:58025296..58025459mRNAPaHa05g18820.1
CDS
part_ofPaHa05g18820.1-CDS-5-1787993825:58025568..58025656mRNAPaHa05g18820.1
CDS
part_ofPaHa05g18820.1-CDS-5-1787993825:58025745..58025789mRNAPaHa05g18820.1
CDS
part_ofPaHa05g18820.1-CDS-5-1787993825:58026021..58026166mRNAPaHa05g18820.1
CDS
part_ofPaHa05g18820.1-CDS-5-1787993825:58026278..58026365mRNAPaHa05g18820.1
CDS
part_ofPaHa05g18820.1-CDS-5-1787993825:58026488..58026518mRNAPaHa05g18820.1
CDS
part_ofPaHa05g18820.1-CDS-5-1787993825:58026638..58026663mRNAPaHa05g18820.1
CDS
part_ofPaHa05g18820.1-CDS-5-1787993825:58026763..58027247mRNAPaHa05g18820.1
exon
part_ofPaHa05g18820.1-exon-5-1787993825:58024699..58025202mRNAPaHa05g18820.1
exon
part_ofPaHa05g18820.1-exon-5-1787993825:58025296..58025459mRNAPaHa05g18820.1
exon
part_ofPaHa05g18820.1-exon-5-1787993825:58025568..58025656mRNAPaHa05g18820.1
exon
part_ofPaHa05g18820.1-exon-5-1787993825:58025745..58025789mRNAPaHa05g18820.1
exon
part_ofPaHa05g18820.1-exon-5-1787993825:58026021..58026166mRNAPaHa05g18820.1
exon
part_ofPaHa05g18820.1-exon-5-1787993825:58026278..58026365mRNAPaHa05g18820.1
exon
part_ofPaHa05g18820.1-exon-5-1787993825:58026488..58026518mRNAPaHa05g18820.1
exon
part_ofPaHa05g18820.1-exon-5-1787993825:58026638..58026663mRNAPaHa05g18820.1
exon
part_ofPaHa05g18820.1-exon-5-1787993825:58026763..58027247mRNAPaHa05g18820.1
