Feature identity
- Identifier
- PaHa05g17540.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 3,120 bp
- Genomic location
- 5:55,706,715–55,727,758
- Strand
- −
Hass · mRNA
PaHa05g17540.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 3,120
- bp
- 5:55,706,715–55,727,758
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g17540
- eggNOG
- Preferred name: MYB3R4 | Seed ortholog: 337451.A0A443NXB7 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AWj-28, Myb_DNA-binding@2759|AhA-29
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005819 spindle; GO:0006355 regulation of DNA-templated transcription; GO:0008285 negative regulation of cell population proliferation; GO:0009524 phragmoplast; GO:0009620 response to fungus; GO:0009751 response to salicylic acid; GO:0032465 regulation of cytokinesis; GO:0032875 regulation of DNA endoreduplication; GO:0043565 sequence-specific DNA binding; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0050832 defense response to fungus; GO:0070176 DRM complex; GO:1901181 negative regulation of cellular response to caffeine
- KEGG
- KO: K09420 | Pathway: 04151, 04218 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g17540.1-protein
derives_frommRNAPaHa05g17540.1
mRNAPaHa05g17540.1
part_ofgenePaHa05g17540
CDS
part_ofPaHa05g17540.1-CDS-5-1787993825:55706715..55706861mRNAPaHa05g17540.1
CDS
part_ofPaHa05g17540.1-CDS-5-1787993825:55707718..55707906mRNAPaHa05g17540.1
CDS
part_ofPaHa05g17540.1-CDS-5-1787993825:55709798..55709915mRNAPaHa05g17540.1
CDS
part_ofPaHa05g17540.1-CDS-5-1787993825:55710669..55710925mRNAPaHa05g17540.1
CDS
part_ofPaHa05g17540.1-CDS-5-1787993825:55711785..55713648mRNAPaHa05g17540.1
CDS
part_ofPaHa05g17540.1-CDS-5-1787993825:55713871..55713999mRNAPaHa05g17540.1
CDS
part_ofPaHa05g17540.1-CDS-5-1787993825:55714999..55715102mRNAPaHa05g17540.1
CDS
part_ofPaHa05g17540.1-CDS-5-1787993825:55715297..55715391mRNAPaHa05g17540.1
CDS
part_ofPaHa05g17540.1-CDS-5-1787993825:55724393..55724450mRNAPaHa05g17540.1
CDS
part_ofPaHa05g17540.1-CDS-5-1787993825:55726177..55726231mRNAPaHa05g17540.1
CDS
part_ofPaHa05g17540.1-CDS-5-1787993825:55727655..55727758mRNAPaHa05g17540.1
exon
part_ofPaHa05g17540.1-exon-5-1787993825:55706715..55706861mRNAPaHa05g17540.1
exon
part_ofPaHa05g17540.1-exon-5-1787993825:55707718..55707906mRNAPaHa05g17540.1
exon
part_ofPaHa05g17540.1-exon-5-1787993825:55709798..55709915mRNAPaHa05g17540.1
exon
part_ofPaHa05g17540.1-exon-5-1787993825:55710669..55710925mRNAPaHa05g17540.1
exon
part_ofPaHa05g17540.1-exon-5-1787993825:55711785..55713648mRNAPaHa05g17540.1
exon
part_ofPaHa05g17540.1-exon-5-1787993825:55713871..55713999mRNAPaHa05g17540.1
exon
part_ofPaHa05g17540.1-exon-5-1787993825:55714999..55715102mRNAPaHa05g17540.1
exon
part_ofPaHa05g17540.1-exon-5-1787993825:55715297..55715391mRNAPaHa05g17540.1
exon
part_ofPaHa05g17540.1-exon-5-1787993825:55724393..55724450mRNAPaHa05g17540.1
exon
part_ofPaHa05g17540.1-exon-5-1787993825:55726177..55726231mRNAPaHa05g17540.1
exon
part_ofPaHa05g17540.1-exon-5-1787993825:55727655..55727758mRNAPaHa05g17540.1
