Hass · mRNA

PaHa05g17060.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,909
bp
5:54,795,534–54,824,299
genomic location
Record overview

Feature identity

Identifier
PaHa05g17060.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,909 bp
Genomic location
5:54,795,534–54,824,299
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: KIN4C | Seed ortholog: 337451.A0A443NX98 | COG: S | eggNOG OG: Kinesin@131567|A-1*, Kinesin@2759|TX-12, Kinesin@3193|CrG-22
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000278 mitotic cell cycle; GO:0000281 mitotic cytokinesis; GO:0003774 cytoskeletal motor activity; GO:0003777 microtubule motor activity; GO:0005119 smoothened binding; GO:0005515 protein binding; GO:0005524 ATP binding; GO:0005634 nucleus; GO:0006996 organelle organization; GO:0007052 mitotic spindle organization; GO:0007059 chromosome segregation; GO:0007088 regulation of mitotic nuclear division; GO:0007110 meiosis I cytokinesis; GO:0007131 reciprocal meiotic recombination; GO:0007140 male meiotic nuclear division; GO:0007224 smoothened signaling pathway; GO:0007338 single fertilization; GO:0007476 imaginal disc-derived wing morphogenesis; GO:0008017 microtubule binding; GO:0008089 anterograde axonal transport; GO:0008574 plus-end-directed microtubule motor activity; GO:0009506 plasmodesma; GO:0009524 phragmoplast; GO:0010032 meiotic chromosome condensation; GO:0016321 female meiosis chromosome segregation; GO:0019901 protein kinase binding; GO:0030707 follicle cell of egg chamber development; GO:0031625 ubiquitin protein ligase binding; GO:0035591 signaling adaptor activity; GO:0042073 intraciliary transport; GO:0042981 regulation of apoptotic process; GO:0045879 negative regulation of smoothened signaling pathway; GO:0051231 spindle elongation; GO:0051256 mitotic spindle midzone assembly; GO:0051257 meiotic spindle midzone assembly; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0090404 pollen tube tip; GO:0140313 molecular sequestering activity
KEGG
KO: K06227, K10393, K10395, K10396, K10397, K10405, K10406, K18806, K24186 | Pathway: 04144, 04341, 04814 | BRITE: 00001, 03036, 04131, 04147, 04812
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa05g17060.1-CDS-5-1787993825:54795534..54795564
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CDSPaHa05g17060.1-CDS-5-1787993825:54796747..54796832
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CDSPaHa05g17060.1-CDS-5-1787993825:54802419..54802598
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CDSPaHa05g17060.1-CDS-5-1787993825:54803228..54803878
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CDSPaHa05g17060.1-CDS-5-1787993825:54804220..54804321
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CDSPaHa05g17060.1-CDS-5-1787993825:54804721..54804865
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CDSPaHa05g17060.1-CDS-5-1787993825:54806184..54806411
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CDSPaHa05g17060.1-CDS-5-1787993825:54806570..54806641
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CDSPaHa05g17060.1-CDS-5-1787993825:54807264..54807349
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CDSPaHa05g17060.1-CDS-5-1787993825:54807504..54807535
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CDSPaHa05g17060.1-CDS-5-1787993825:54807627..54807720
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CDSPaHa05g17060.1-CDS-5-1787993825:54807804..54807875
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CDSPaHa05g17060.1-CDS-5-1787993825:54811636..54811716
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CDSPaHa05g17060.1-CDS-5-1787993825:54811807..54811923
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CDSPaHa05g17060.1-CDS-5-1787993825:54812000..54812113
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CDSPaHa05g17060.1-CDS-5-1787993825:54812191..54812292
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CDSPaHa05g17060.1-CDS-5-1787993825:54815353..54815450
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CDSPaHa05g17060.1-CDS-5-1787993825:54816114..54816300
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CDSPaHa05g17060.1-CDS-5-1787993825:54816393..54816479
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CDSPaHa05g17060.1-CDS-5-1787993825:54816907..54817020
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CDSPaHa05g17060.1-CDS-5-1787993825:54817106..54817219
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CDSPaHa05g17060.1-CDS-5-1787993825:54817301..54817392
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CDSPaHa05g17060.1-CDS-5-1787993825:54817519..54817555
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CDSPaHa05g17060.1-CDS-5-1787993825:54821267..54821391
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CDSPaHa05g17060.1-CDS-5-1787993825:54821478..54821659
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CDSPaHa05g17060.1-CDS-5-1787993825:54822418..54822671
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CDSPaHa05g17060.1-CDS-5-1787993825:54822932..54823084
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CDSPaHa05g17060.1-CDS-5-1787993825:54823413..54823559
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CDSPaHa05g17060.1-CDS-5-1787993825:54824174..54824299
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exonPaHa05g17060.1-exon-5-1787993825:54795534..54795564
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exonPaHa05g17060.1-exon-5-1787993825:54796747..54796832
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exonPaHa05g17060.1-exon-5-1787993825:54802419..54802598
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exonPaHa05g17060.1-exon-5-1787993825:54803228..54803878
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exonPaHa05g17060.1-exon-5-1787993825:54804220..54804321
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exonPaHa05g17060.1-exon-5-1787993825:54804721..54804865
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exonPaHa05g17060.1-exon-5-1787993825:54806184..54806411
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exonPaHa05g17060.1-exon-5-1787993825:54806570..54806641
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exonPaHa05g17060.1-exon-5-1787993825:54807264..54807349
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exonPaHa05g17060.1-exon-5-1787993825:54807504..54807535
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exonPaHa05g17060.1-exon-5-1787993825:54807627..54807720
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exonPaHa05g17060.1-exon-5-1787993825:54807804..54807875
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exonPaHa05g17060.1-exon-5-1787993825:54811636..54811716
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exonPaHa05g17060.1-exon-5-1787993825:54811807..54811923
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exonPaHa05g17060.1-exon-5-1787993825:54812000..54812113
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exonPaHa05g17060.1-exon-5-1787993825:54812191..54812292
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exonPaHa05g17060.1-exon-5-1787993825:54815353..54815450
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exonPaHa05g17060.1-exon-5-1787993825:54816114..54816300
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exonPaHa05g17060.1-exon-5-1787993825:54816393..54816479
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exonPaHa05g17060.1-exon-5-1787993825:54816907..54817020
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exonPaHa05g17060.1-exon-5-1787993825:54817106..54817219
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exonPaHa05g17060.1-exon-5-1787993825:54817301..54817392
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exonPaHa05g17060.1-exon-5-1787993825:54817519..54817555
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exonPaHa05g17060.1-exon-5-1787993825:54821267..54821391
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exonPaHa05g17060.1-exon-5-1787993825:54821478..54821659
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exonPaHa05g17060.1-exon-5-1787993825:54822418..54822671
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exonPaHa05g17060.1-exon-5-1787993825:54822932..54823084
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exonPaHa05g17060.1-exon-5-1787993825:54823413..54823559
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exonPaHa05g17060.1-exon-5-1787993825:54824174..54824299
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