Feature identity
- Identifier
- PaHa05g17040.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 666 bp
- Genomic location
- 5:54,753,480–54,758,181
- Strand
- −
Hass · mRNA
PaHa05g17040.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 666
- bp
- 5:54,753,480–54,758,181
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g17040
- eggNOG
- Preferred name: LOC104595487 | Seed ortholog: 337451.A0A443NX95 | COG: S | eggNOG OG: PTPLA@131567|C-2
- Gene Ontology
- GO:0004725 protein tyrosine phosphatase activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005829 cytosol; GO:0009923 fatty acid elongase complex; GO:0018812 3-hydroxyacyl-CoA dehydratase activity; GO:0030154 cell differentiation; GO:0042761 very long-chain fatty acid biosynthetic process; GO:0048640 negative regulation of developmental growth; GO:0051302 regulation of cell division; GO:0102158 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase activity
- KEGG
- EC: ec:4.2.1.134 | KO: K10703 | Pathway: 00062, 01040, 01100, 01110, 01212 | Module: M00415 | BRITE: 00001, 01000, 01004
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g17040.1-protein
derives_frommRNAPaHa05g17040.1
mRNAPaHa05g17040.1
part_ofgenePaHa05g17040
CDS
part_ofPaHa05g17040.1-CDS-5-1787993825:54753480..54753550mRNAPaHa05g17040.1
CDS
part_ofPaHa05g17040.1-CDS-5-1787993825:54753660..54753756mRNAPaHa05g17040.1
CDS
part_ofPaHa05g17040.1-CDS-5-1787993825:54754389..54754470mRNAPaHa05g17040.1
CDS
part_ofPaHa05g17040.1-CDS-5-1787993825:54754555..54754625mRNAPaHa05g17040.1
CDS
part_ofPaHa05g17040.1-CDS-5-1787993825:54756947..54757000mRNAPaHa05g17040.1
CDS
part_ofPaHa05g17040.1-CDS-5-1787993825:54757082..54757170mRNAPaHa05g17040.1
CDS
part_ofPaHa05g17040.1-CDS-5-1787993825:54757766..54757784mRNAPaHa05g17040.1
CDS
part_ofPaHa05g17040.1-CDS-5-1787993825:54757889..54758000mRNAPaHa05g17040.1
CDS
part_ofPaHa05g17040.1-CDS-5-1787993825:54758111..54758181mRNAPaHa05g17040.1
exon
part_ofPaHa05g17040.1-exon-5-1787993825:54753480..54753550mRNAPaHa05g17040.1
exon
part_ofPaHa05g17040.1-exon-5-1787993825:54753660..54753756mRNAPaHa05g17040.1
exon
part_ofPaHa05g17040.1-exon-5-1787993825:54754389..54754470mRNAPaHa05g17040.1
exon
part_ofPaHa05g17040.1-exon-5-1787993825:54754555..54754625mRNAPaHa05g17040.1
exon
part_ofPaHa05g17040.1-exon-5-1787993825:54756947..54757000mRNAPaHa05g17040.1
exon
part_ofPaHa05g17040.1-exon-5-1787993825:54757082..54757170mRNAPaHa05g17040.1
exon
part_ofPaHa05g17040.1-exon-5-1787993825:54757766..54757784mRNAPaHa05g17040.1
exon
part_ofPaHa05g17040.1-exon-5-1787993825:54757889..54758000mRNAPaHa05g17040.1
exon
part_ofPaHa05g17040.1-exon-5-1787993825:54758111..54758181mRNAPaHa05g17040.1
