Feature identity
- Identifier
- PaHa05g16920.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,188 bp
- Genomic location
- 5:54,508,393–54,510,489
- Strand
- +
Hass · mRNA
PaHa05g16920.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,188
- bp
- 5:54,508,393–54,510,489
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g16920
- eggNOG
- Preferred name: LOC123119581 | Seed ortholog: 337451.A0A443NXA7 | COG: S | eggNOG OG: Myb_DNA-binding@33090|B-2!, Myb_DNA-binding@3398|Ab-9, Myb_DNA-binding@35493|X-6
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0010629 negative regulation of gene expression; GO:0048449 floral organ formation; GO:0090701 specification of plant organ identity
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g16920.1-protein
derives_frommRNAPaHa05g16920.1
mRNAPaHa05g16920.1
part_ofgenePaHa05g16920
CDS
part_ofPaHa05g16920.1-CDS-5-1787993825:54508393..54508603mRNAPaHa05g16920.1
CDS
part_ofPaHa05g16920.1-CDS-5-1787993825:54508729..54508958mRNAPaHa05g16920.1
CDS
part_ofPaHa05g16920.1-CDS-5-1787993825:54509053..54509437mRNAPaHa05g16920.1
CDS
part_ofPaHa05g16920.1-CDS-5-1787993825:54510027..54510103mRNAPaHa05g16920.1
CDS
part_ofPaHa05g16920.1-CDS-5-1787993825:54510205..54510489mRNAPaHa05g16920.1
exon
part_ofPaHa05g16920.1-exon-5-1787993825:54508393..54508603mRNAPaHa05g16920.1
exon
part_ofPaHa05g16920.1-exon-5-1787993825:54508729..54508958mRNAPaHa05g16920.1
exon
part_ofPaHa05g16920.1-exon-5-1787993825:54509053..54509437mRNAPaHa05g16920.1
exon
part_ofPaHa05g16920.1-exon-5-1787993825:54510027..54510103mRNAPaHa05g16920.1
exon
part_ofPaHa05g16920.1-exon-5-1787993825:54510205..54510489mRNAPaHa05g16920.1
