Feature identity
- Identifier
- PaHa05g16160.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,545 bp
- Genomic location
- 5:53,215,948–53,231,494
- Strand
- +
Hass · mRNA
PaHa05g16160.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,545
- bp
- 5:53,215,948–53,231,494
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g16160
- eggNOG
- Preferred name: SPL6 | Seed ortholog: 337451.A0A443NXL1 | COG: S | eggNOG OG: SBP@131567|A-1*, SBP@3193|S-5, SBP@33090|I-4, SBP@58023|EN-10
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0010468 regulation of gene expression; GO:0042742 defense response to bacterium
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g16160.1-protein
derives_frommRNAPaHa05g16160.1
mRNAPaHa05g16160.1
part_ofgenePaHa05g16160
CDS
part_ofPaHa05g16160.1-CDS-5-1787993825:53215948..53216567mRNAPaHa05g16160.1
CDS
part_ofPaHa05g16160.1-CDS-5-1787993825:53221978..53222090mRNAPaHa05g16160.1
CDS
part_ofPaHa05g16160.1-CDS-5-1787993825:53230683..53231494mRNAPaHa05g16160.1
exon
part_ofPaHa05g16160.1-exon-5-1787993825:53215948..53216567mRNAPaHa05g16160.1
exon
part_ofPaHa05g16160.1-exon-5-1787993825:53221978..53222090mRNAPaHa05g16160.1
exon
part_ofPaHa05g16160.1-exon-5-1787993825:53230683..53231494mRNAPaHa05g16160.1
