West Indian T2T · gene

Pa01g3936

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

538
bp
Pa01:89,178,078–89,178,615
genomic location
Record overview

Feature identity

Identifier
Pa01g3936
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
538 bp
Genomic location
Pa01:89,178,078–89,178,615
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: TRN1 | Seed ortholog: 1088818.A0A2I0BHK6 | COG: S | eggNOG OG: HEAT_EZ@131567|u-6, HEAT_EZ@2759|EH-10, HEAT_EZ@3193|pn-22, IBN_N@131567|A-1*, IBN_N@2759|BD-9, IBN_N@3193|ANN-24
Gene Ontology
GO:0000278 mitotic cell cycle; GO:0003723 RNA binding; GO:0005085 guanyl-nucleotide exchange factor activity; GO:0005515 protein binding; GO:0005525 GTP binding; GO:0005829 cytosol; GO:0006404 RNA import into nucleus; GO:0006606 protein import into nucleus; GO:0006607 NLS-bearing protein import into nucleus; GO:0006610 ribosomal protein import into nucleus; GO:0006612 protein targeting to membrane; GO:0006656 phosphatidylcholine biosynthetic process; GO:0007079 mitotic chromosome movement towards spindle pole; GO:0007080 mitotic metaphase chromosome alignment; GO:0007304 chorion-containing eggshell formation; GO:0008270 zinc ion binding; GO:0009792 embryo development ending in birth or egg hatching; GO:0019894 kinesin binding; GO:0019899 enzyme binding; GO:0019904 protein domain specific binding; GO:0030953 astral microtubule organization; GO:0035332 positive regulation of hippo signaling; GO:0040001 establishment of mitotic spindle localization; GO:0044877 protein-containing complex binding; GO:0045540 regulation of cholesterol biosynthetic process; GO:0045542 positive regulation of cholesterol biosynthetic process; GO:0045893 positive regulation of DNA-templated transcription; GO:0046822 regulation of nucleocytoplasmic transport; GO:0051170 import into nucleus; GO:0051292 nuclear pore complex assembly; GO:0051879 Hsp90 protein binding; GO:0060188 regulation of protein desumoylation; GO:0061608 nuclear import signal receptor activity; GO:0061676 importin-alpha family protein binding; GO:0090307 mitotic spindle assembly; GO:0097718 disordered domain specific binding; GO:0140142 nucleocytoplasmic carrier activity
KEGG
KO: K14293 | Pathway: 03013 | BRITE: 00001, 03009, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.