West Indian T2T · gene

Pa01g3563

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

297
bp
Pa01:84,592,317–84,592,613
genomic location
Record overview

Feature identity

Identifier
Pa01g3563
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
297 bp
Genomic location
Pa01:84,592,317–84,592,613
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: MADS23 | Seed ortholog: 337451.A0A443NNC6 | COG: S | eggNOG OG: SRF-TF@131567|A-1*, SRF-TF@1437183|BB-11, SRF-TF@2759|C-2!, SRF-TF@3193|Ae-10
Gene Ontology
GO:0000086 G2/M transition of mitotic cell cycle; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000165 MAPK cascade; GO:0000785 chromatin; GO:0001568 blood vessel development; GO:0001569 branching involved in blood vessel morphogenesis; GO:0001649 osteoblast differentiation; GO:0001666 response to hypoxia; GO:0001701 in utero embryonic development; GO:0001707 mesoderm formation; GO:0001708 cell fate specification; GO:0001756 somitogenesis; GO:0001764 neuron migration; GO:0001782 B cell homeostasis; GO:0001829 trophectodermal cell differentiation; GO:0001947 heart looping; GO:0001958 endochondral ossification; GO:0001974 blood vessel remodeling; GO:0002011 morphogenesis of an epithelial sheet; GO:0002042 cell migration involved in sprouting angiogenesis; GO:0002062 chondrocyte differentiation; GO:0002168 instar larval development; GO:0002467 germinal center formation; GO:0002521 leukocyte differentiation; GO:0002634 regulation of germinal center formation; GO:0002931 response to ischemia; GO:0003138 primary heart field specification; GO:0003139 secondary heart field specification; GO:0003143 embryonic heart tube morphogenesis; GO:0003151 outflow tract morphogenesis; GO:0003185 sinoatrial valve morphogenesis; GO:0003211 cardiac ventricle formation; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005635 nuclear envelope; GO:0005654 nucleoplasm; GO:0005667 transcription regulator complex; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006959 humoral immune response; GO:0006974 DNA damage response; GO:0007015 actin filament organization; GO:0007160 cell-matrix adhesion; GO:0007165 signal transduction; GO:0007168 receptor guanylyl cyclase signaling pathway; GO:0007369 gastrulation; GO:0007411 axon guidance; GO:0007424 open tracheal system development; GO:0007430 terminal branching, open tracheal system; GO:0007475 apposition of dorsal and ventral imaginal disc-derived wing surfaces; GO:0007476 imaginal disc-derived wing morphogenesis; GO:0007507 heart development; GO:0007512 adult heart development; GO:0007517 muscle organ development; GO:0007519 skeletal muscle tissue development; GO:0007521 muscle cell fate determination; GO:0007532 regulation of mating-type specific transcription, DNA-templated; GO:0007584 response to nutrient; GO:0007611 learning or memory; GO:0007614 short-term memory; GO:0007616 long-term memory; GO:0008150 biological_process; GO:0008285 negative regulation of cell population proliferation; GO:0008306 associative learning; GO:0008360 regulation of cell shape; GO:0008586 imaginal disc-derived wing vein morphogenesis; GO:0009266 response to temperature stimulus; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009553 embryo sac development; GO:0009555 pollen development; GO:0009631 cold acclimation; GO:0009636 response to toxic substance; GO:0009725 response to hormone; GO:0009739 response to gibberellin; GO:0009742 brassinosteroid mediated signaling pathway; GO:0009793 embryo development ending in seed dormancy; GO:0009838 abscission; GO:0009908 flower development; GO:0009909 regulation of flower development; GO:0009910 negative regulation of flower development; GO:0009911 positive regulation of flower development; GO:0009933 meristem structural organization; GO:0009952 anterior/posterior pattern specification; GO:0010022 meristem determinacy; GO:0010047 fruit dehiscence; GO:0010048 vernalization response; GO:0010076 maintenance of floral meristem identity; GO:0010077 maintenance of inflorescence meristem identity; GO:0010082 regulation of root meristem growth; GO:0010093 specification of floral organ identity; GO:0010094 specification of carpel identity; GO:0010095 specification of petal identity; GO:0010097 specification of stamen identity; GO:0010150 leaf senescence; GO:0010152 pollen maturation; GO:0010154 fruit development; GO:0010167 response to nitrate; GO:0010214 seed coat development; GO:0010220 positive regulation of vernalization response; GO:0010221 negative regulation of vernalization response; GO:0010227 floral organ abscission; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0010262 somatic embryogenesis; GO:0010440 stomatal lineage progression; GO:0010467 gene expression; GO:0010468 regulation of gene expression; GO:0010582 floral meristem determinacy; GO:0010613 positive regulation of cardiac muscle hypertrophy; GO:0010622 specification of ovule identity; GO:0010628 positive regulation of gene expression; GO:0010629 negative regulation of gene expression; GO:0010669 epithelial structure maintenance; GO:0014033 neural crest cell differentiation; GO:0014056 regulation of acetylcholine secretion, neurotransmission; GO:0014898 cardiac muscle hypertrophy in response to stress; GO:0016607 nuclear speck; GO:0019252 starch biosynthetic process; GO:0021766 hippocampus development; GO:0022028 tangential migration from the subventricular zone to the olfactory bulb; GO:0023052 signaling; GO:0030017 sarcomere; GO:0030036 actin cytoskeleton organization; GO:0030038 contractile actin filament bundle assembly; GO:0030154 cell differentiation; GO:0030155 regulation of cell adhesion; GO:0030168 platelet activation; GO:0030182 neuron differentiation; GO:0030220 platelet formation; GO:0030224 monocyte differentiation; GO:0030239 myofibril assembly; GO:0030241 skeletal muscle myosin thick filament assembly; GO:0030279 negative regulation of ossification; GO:0030308 negative regulation of cell growth; GO:0030318 melanocyte differentiation; GO:0030336 negative regulation of cell migration; GO:0030431 sleep; GO:0030435 sporulation resulting in formation of a cellular spore; GO:0030447 filamentous growth; GO:0030501 positive regulation of bone mineralization; GO:0030878 thyroid gland development; GO:0030890 positive regulation of B cell proliferation; GO:0030900 forebrain development; GO:0031139 positive regulation of conjugation with cellular fusion; GO:0031152 aggregation involved in sorocarp development; GO:0031154 culmination involved in sorocarp development; GO:0031175 neuron projection development; GO:0031247 actin rod assembly; GO:0031285 regulation of sorocarp stalk cell differentiation; GO:0031494 regulation of mating type switching; GO:0031505 fungal-type cell wall organization; GO:0032991 protein-containing complex; GO:0033554 cellular response to stress; GO:0034097 response to cytokine; GO:0034605 cellular response to heat; GO:0035050 embryonic heart tube development; GO:0035051 cardiocyte differentiation; GO:0035209 pupal development; GO:0035220 wing disc development; GO:0035855 megakaryocyte development; GO:0035912 dorsal aorta morphogenesis; GO:0035914 skeletal muscle cell differentiation; GO:0035984 cellular response to trichostatin A; GO:0036076 ligamentous ossification; GO:0042100 B cell proliferation; GO:0042244 spore wall assembly; GO:0042331 phototaxis; GO:0042594 response to starvation; GO:0042752 regulation of circadian rhythm; GO:0043068 positive regulation of programmed cell death; GO:0043078 polar nucleus; GO:0043149 stress fiber assembly; GO:0043410 positive regulation of MAPK cascade; GO:0043523 regulation of neuron apoptotic process; GO:0043524 negative regulation of neuron apoptotic process; GO:0043537 negative regulation of blood vessel endothelial cell migration; GO:0043589 skin morphogenesis; GO:0043945 positive regulation of asexual sporulation resulting in formation of a cellular spore; GO:0044182 filamentous growth of a population of unicellular organisms; GO:0045059 positive thymic T cell selection; GO:0045165 cell fate commitment; GO:0045214 sarcomere organization; GO:0045487 gibberellin catabolic process; GO:0045595 regulation of cell differentiation; GO:0045597 positive regulation of cell differentiation; GO:0045652 regulation of megakaryocyte differentiation; GO:0045663 positive regulation of myoblast differentiation; GO:0045666 positive regulation of neuron differentiation; GO:0045667 regulation of osteoblast differentiation; GO:0045669 positive regulation of osteoblast differentiation; GO:0045773 positive regulation of axon extension; GO:0045785 positive regulation of cell adhesion; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0045987 positive regulation of smooth muscle contraction; GO:0046016 positive regulation of transcription by glucose; GO:0046326 positive regulation of D-glucose import across plasma membrane; GO:0046716 muscle cell cellular homeostasis; GO:0046928 regulation of neurotransmitter secretion; GO:0048167 regulation of synaptic plasticity; GO:0048283 indeterminate inflorescence morphogenesis; GO:0048316 seed development; GO:0048364 root development; GO:0048366 leaf development; GO:0048437 floral organ development; GO:0048438 floral whorl development; GO:0048440 carpel development; GO:0048441 petal development; GO:0048442 sepal development; GO:0048443 stamen development; GO:0048449 floral organ formation; GO:0048455 stamen formation; GO:0048457 floral whorl morphogenesis; GO:0048459 floral whorl structural organization; GO:0048481 plant ovule development; GO:0048497 maintenance of floral organ identity; GO:0048509 regulation of meristem development; GO:0048510 regulation of timing of transition from vegetative to reproductive phase; GO:0048527 lateral root development; GO:0048530 fruit morphogenesis; GO:0048538 thymus development; GO:0048573 photoperiodism, flowering; GO:0048576 positive regulation of short-day photoperiodism, flowering; GO:0048577 negative regulation of short-day photoperiodism, flowering; GO:0048578 positive regulation of long-day photoperiodism, flowering; GO:0048586 regulation of long-day photoperiodism, flowering; GO:0048587 regulation of short-day photoperiodism, flowering; GO:0048589 developmental growth; GO:0048643 positive regulation of skeletal muscle tissue development; GO:0048666 neuron development; GO:0048667 cell morphogenesis involved in neuron differentiation; GO:0048703 embryonic viscerocranium morphogenesis; GO:0048704 embryonic skeletal system morphogenesis; GO:0048813 dendrite morphogenesis; GO:0048821 erythrocyte development; GO:0048833 specification of floral organ number; GO:0050680 negative regulation of epithelial cell proliferation; GO:0050853 B cell receptor signaling pathway; GO:0051145 smooth muscle cell differentiation; GO:0051149 positive regulation of muscle cell differentiation; GO:0051150 regulation of smooth muscle cell differentiation; GO:0051302 regulation of cell division; GO:0051491 positive regulation of filopodium assembly; GO:0051963 regulation of synapse assembly; GO:0051966 regulation of synaptic transmission, glutamatergic; GO:0055001 muscle cell development; GO:0055003 cardiac myofibril assembly; GO:0055007 cardiac muscle cell differentiation; GO:0055012 ventricular cardiac muscle cell differentiation; GO:0055013 cardiac muscle cell development; GO:0060021 roof of mouth development; GO:0060025 regulation of synaptic activity; GO:0060045 positive regulation of cardiac muscle cell proliferation; GO:0060055 angiogenesis involved in wound healing; GO:0060079 excitatory postsynaptic potential; GO:0060218 hematopoietic stem cell differentiation; GO:0060256 regulation of flocculation; GO:0060261 positive regulation of transcription initiation by RNA polymerase II; GO:0060290 transdifferentiation; GO:0060292 long-term synaptic depression; GO:0060297 regulation of sarcomere organization; GO:0060324 face development; GO:0060347 heart trabecula formation; GO:0060349 bone morphogenesis; GO:0060379 cardiac muscle cell myoblast differentiation; GO:0060425 lung morphogenesis; GO:0060446 branching involved in open tracheal system development; GO:0060532 bronchus cartilage development; GO:0060534 trachea cartilage development; GO:0060536 cartilage morphogenesis; GO:0060560 developmental growth involved in morphogenesis; GO:0060862 negative regulation of floral organ abscission; GO:0060867 fruit abscission; GO:0060914 heart formation; GO:0060947 cardiac vascular smooth muscle cell differentiation; GO:0060998 regulation of dendritic spine development; GO:0061029 eyelid development in camera-type eye; GO:0061145 lung smooth muscle development; GO:0061333 renal tubule morphogenesis; GO:0061436 establishment of skin barrier; GO:0070375 ERK5 cascade; GO:0070830 bicellular tight junction assembly; GO:0071222 cellular response to lipopolysaccharide; GO:0071249 cellular response to nitrate; GO:0071277 cellular response to calcium ion; GO:0071300 cellular response to retinoic acid; GO:0071333 cellular response to glucose stimulus; GO:0071363 cellular response to growth factor stimulus; GO:0071365 cellular response to auxin stimulus; GO:0071374 cellular response to parathyroid hormone stimulus; GO:0071466 cellular response to xenobiotic stimulus; GO:0071470 cellular response to osmotic stress; GO:0071498 cellular response to fluid shear stress; GO:0071526 semaphorin-plexin signaling pathway; GO:0071554 cell wall organization or biogenesis; GO:0071560 cellular response to transforming growth factor beta stimulus; GO:0071669 plant-type cell wall organization or biogenesis; GO:0071864 positive regulation of cell proliferation in bone marrow; GO:0072102 glomerulus morphogenesis; GO:0072160 nephron tubule epithelial cell differentiation; GO:0080001 mucilage extrusion from seed coat; GO:0080060 integument development; GO:0080092 regulation of pollen tube growth; GO:0080112 seed growth; GO:0080155 regulation of double fertilization forming a zygote and endosperm; GO:0080187 floral organ senescence; GO:0090009 primitive streak formation; GO:0090136 epithelial cell-cell adhesion; GO:0090376 seed trichome differentiation; GO:0090397 stigma papilla; GO:0090398 cellular senescence; GO:0090406 pollen tube; GO:0090571 RNA polymerase II transcription repressor complex; GO:0090575 RNA polymerase II transcription regulator complex; GO:0097221 M/G1 phase-specific MADS box-forkhead transcription factor complex; GO:0097492 sympathetic neuron axon guidance; GO:0098609 cell-cell adhesion; GO:0098989 NMDA selective glutamate receptor signaling pathway; GO:0098990 AMPA selective glutamate receptor signaling pathway; GO:0140582 adenylate cyclase-activating G protein-coupled cAMP receptor signaling pathway; GO:1900079 regulation of arginine biosynthetic process; GO:1900080 positive regulation of arginine biosynthetic process; GO:1900081 regulation of arginine catabolic process; GO:1900082 negative regulation of arginine catabolic process; GO:1900222 negative regulation of amyloid-beta clearance; GO:1900458 negative regulation of brassinosteroid mediated signaling pathway; GO:1900461 positive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoter; GO:1900735 positive regulation of flocculation; GO:1901261 regulation of sorocarp spore cell differentiation; GO:1902894 negative regulation of miRNA transcription; GO:1902895 positive regulation of miRNA transcription; GO:1903450 regulation of G1 to G0 transition; GO:1904706 negative regulation of vascular associated smooth muscle cell proliferation; GO:1904707 positive regulation of vascular associated smooth muscle cell proliferation; GO:1904753 negative regulation of vascular associated smooth muscle cell migration; GO:1905563 negative regulation of vascular endothelial cell proliferation; GO:2000012 regulation of auxin polar transport; GO:2000028 regulation of photoperiodism, flowering; GO:2000029 regulation of proanthocyanidin biosynthetic process; GO:2000111 positive regulation of macrophage apoptotic process; GO:2000220 regulation of pseudohyphal growth; GO:2000692 negative regulation of seed maturation; GO:2000727 positive regulation of cardiac muscle cell differentiation; GO:2000987 positive regulation of behavioral fear response; GO:2001013 epithelial cell proliferation involved in renal tubule morphogenesis; GO:2001016 positive regulation of skeletal muscle cell differentiation
KEGG
KO: K12412 | Pathway: 04010, 04011, 04013, 04022, 04111, 04371, 04921, 04928, 05166, 05202, 05203, 05418 | BRITE: 00001, 03000, 03021
Biological context

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