West Indian T2T · gene

Pa01g3353

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,667
bp
Pa01:81,534,178–81,535,844
genomic location
Record overview

Feature identity

Identifier
Pa01g3353
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
1,667 bp
Genomic location
Pa01:81,534,178–81,535,844
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC107759231 | Seed ortholog: 337451.A0A3S3MQZ2 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@33090|DqE-36, Myb_DNA-binding@35493|FSr-38, Myb_DNA-binding@58023|HJt-40
Gene Ontology
GO:0000793 condensed chromosome; GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0008285 negative regulation of cell population proliferation; GO:0008356 asymmetric cell division; GO:0009409 response to cold; GO:0009414 response to water deprivation; GO:0009555 pollen development; GO:0009615 response to virus; GO:0009620 response to fungus; GO:0009646 response to absence of light; GO:0009686 gibberellin biosynthetic process; GO:0009723 response to ethylene; GO:0009735 response to cytokinin; GO:0009737 response to abscisic acid; GO:0009739 response to gibberellin; GO:0009740 gibberellic acid mediated signaling pathway; GO:0009753 response to jasmonic acid; GO:0009789 positive regulation of abscisic acid-activated signaling pathway; GO:0009860 pollen tube growth; GO:0009867 jasmonic acid mediated signaling pathway; GO:0009944 polarity specification of adaxial/abaxial axis; GO:0009946 proximal/distal axis specification; GO:0009965 leaf morphogenesis; GO:0010015 root morphogenesis; GO:0010338 leaf formation; GO:0010373 negative regulation of gibberellin biosynthetic process; GO:0010468 regulation of gene expression; GO:0012501 programmed cell death; GO:0016036 cellular response to phosphate starvation; GO:0035865 cellular response to potassium ion; GO:0042742 defense response to bacterium; GO:0042802 identical protein binding; GO:0042803 protein homodimerization activity; GO:0043068 positive regulation of programmed cell death; GO:0043266 regulation of potassium ion transport; GO:0043484 regulation of RNA splicing; GO:0043565 sequence-specific DNA binding; GO:0044839 cell cycle G2/M phase transition; GO:0045088 regulation of innate immune response; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045926 negative regulation of growth; GO:0048235 pollen sperm cell differentiation; GO:0048443 stamen development; GO:0048555 generative cell nucleus; GO:0048653 anther development; GO:0048655 anther wall tapetum morphogenesis; GO:0050832 defense response to fungus; GO:0051607 defense response to virus; GO:0055047 generative cell mitosis; GO:0055062 phosphate ion homeostasis; GO:0080086 stamen filament development; GO:0080092 regulation of pollen tube growth; GO:0090406 pollen tube; GO:0098586 cellular response to virus; GO:0120195 positive regulation of anther dehiscence; GO:1901002 positive regulation of response to salt stress; GO:1901371 regulation of leaf morphogenesis; GO:1902074 response to salt; GO:1902584 positive regulation of response to water deprivation; GO:1990019 protein storage vacuole organization; GO:1990841 promoter-specific chromatin binding
KEGG
KO: K09422 | BRITE: 00001, 03000
Biological context

Connected feature records

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