Feature identity
- Identifier
- PaHa05g14300.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 960 bp
- Genomic location
- 5:49,054,035–49,084,414
- Strand
- −
Hass · mRNA
PaHa05g14300.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 960
- bp
- 5:49,054,035–49,084,414
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g14300
- eggNOG
- Preferred name: BIM1 | Seed ortholog: 337451.A0A443P2E8 | COG: S | eggNOG OG: HLH@131567|Zg-14!, HLH@1437183|CYB-25, HLH@33090|AAF-17, HLH@3398|BVK-22, HLH@35493|AMq-18
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated transcription; GO:0009742 brassinosteroid mediated signaling pathway; GO:0042802 identical protein binding; GO:1902448 positive regulation of shade avoidance
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g14300.1-protein
derives_frommRNAPaHa05g14300.1
mRNAPaHa05g14300.1
part_ofgenePaHa05g14300
CDS
part_ofPaHa05g14300.1-CDS-5-1787993825:49054035..49054148mRNAPaHa05g14300.1
CDS
part_ofPaHa05g14300.1-CDS-5-1787993825:49056748..49056877mRNAPaHa05g14300.1
CDS
part_ofPaHa05g14300.1-CDS-5-1787993825:49076015..49076294mRNAPaHa05g14300.1
CDS
part_ofPaHa05g14300.1-CDS-5-1787993825:49076394..49076457mRNAPaHa05g14300.1
CDS
part_ofPaHa05g14300.1-CDS-5-1787993825:49077369..49077464mRNAPaHa05g14300.1
CDS
part_ofPaHa05g14300.1-CDS-5-1787993825:49077567..49077639mRNAPaHa05g14300.1
CDS
part_ofPaHa05g14300.1-CDS-5-1787993825:49080900..49081008mRNAPaHa05g14300.1
CDS
part_ofPaHa05g14300.1-CDS-5-1787993825:49084321..49084414mRNAPaHa05g14300.1
exon
part_ofPaHa05g14300.1-exon-5-1787993825:49054035..49054148mRNAPaHa05g14300.1
exon
part_ofPaHa05g14300.1-exon-5-1787993825:49056748..49056877mRNAPaHa05g14300.1
exon
part_ofPaHa05g14300.1-exon-5-1787993825:49076015..49076294mRNAPaHa05g14300.1
exon
part_ofPaHa05g14300.1-exon-5-1787993825:49076394..49076457mRNAPaHa05g14300.1
exon
part_ofPaHa05g14300.1-exon-5-1787993825:49077369..49077464mRNAPaHa05g14300.1
exon
part_ofPaHa05g14300.1-exon-5-1787993825:49077567..49077639mRNAPaHa05g14300.1
exon
part_ofPaHa05g14300.1-exon-5-1787993825:49080900..49081008mRNAPaHa05g14300.1
exon
part_ofPaHa05g14300.1-exon-5-1787993825:49084321..49084414mRNAPaHa05g14300.1
