Feature identity
- Identifier
- PaHa05g13620.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,008 bp
- Genomic location
- 5:46,878,781–46,881,926
- Strand
- −
Hass · mRNA
PaHa05g13620.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,008
- bp
- 5:46,878,781–46,881,926
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g13620
- eggNOG
- Preferred name: MYB80 | Seed ortholog: 337451.A0A3S4NYR6 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@3193|LYX-44, Myb_DNA-binding@33090|FSl-38, Myb_DNA-binding@35493|JKf-42
- Gene Ontology
- GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009555 pollen development; GO:0010090 trichome morphogenesis; GO:0043565 sequence-specific DNA binding; GO:0048658 anther wall tapetum development
- KEGG
- EC: ec:1.17.99.9 | KO: K09422 | Pathway: 00190, 00860, 01100, 01110, 01240 | Module: M00154 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g13620.1-protein
derives_frommRNAPaHa05g13620.1
mRNAPaHa05g13620.1
part_ofgenePaHa05g13620
CDS
part_ofPaHa05g13620.1-CDS-5-1787993825:46878781..46879522mRNAPaHa05g13620.1
CDS
part_ofPaHa05g13620.1-CDS-5-1787993825:46880651..46880783mRNAPaHa05g13620.1
CDS
part_ofPaHa05g13620.1-CDS-5-1787993825:46881794..46881926mRNAPaHa05g13620.1
exon
part_ofPaHa05g13620.1-exon-5-1787993825:46878781..46879522mRNAPaHa05g13620.1
exon
part_ofPaHa05g13620.1-exon-5-1787993825:46880651..46880783mRNAPaHa05g13620.1
exon
part_ofPaHa05g13620.1-exon-5-1787993825:46881794..46881926mRNAPaHa05g13620.1
