West Indian T2T · gene

Pa01g0965

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,300
bp
Pa01:13,382,167–13,385,466
genomic location
Record overview

Feature identity

Identifier
Pa01g0965
Feature type
gene
Genome collection
West Indian T2T
Organism
Persea americana-West Indian
Sequence length
3,300 bp
Genomic location
Pa01:13,382,167–13,385,466
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104606005 | Seed ortholog: 337451.A0A443PGR0 | COG: S | eggNOG OG: MAGE@2759|A-1
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000724 double-strand break repair via homologous recombination; GO:0000781 chromosome, telomeric region; GO:0000785 chromatin; GO:0001764 neuron migration; GO:0003016 respiratory system process; GO:0003674 molecular_function; GO:0003690 double-stranded DNA binding; GO:0003713 transcription coactivator activity; GO:0004705 JUN kinase activity; GO:0004842 ubiquitin-protein transferase activity; GO:0005166 neurotrophin p75 receptor binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005768 endosome; GO:0005783 endoplasmic reticulum; GO:0005813 centrosome; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006281 DNA repair; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0006915 apoptotic process; GO:0006974 DNA damage response; GO:0007406 negative regulation of neuroblast proliferation; GO:0007409 axonogenesis; GO:0007413 axonal fasciculation; GO:0007417 central nervous system development; GO:0007420 brain development; GO:0007565 female pregnancy; GO:0007585 respiratory gaseous exchange by respiratory system; GO:0008134 transcription factor binding; GO:0008150 biological_process; GO:0008347 glial cell migration; GO:0009791 post-embryonic development; GO:0010507 negative regulation of autophagy; GO:0010629 negative regulation of gene expression; GO:0010955 negative regulation of protein processing; GO:0016020 membrane; GO:0016567 protein ubiquitination; GO:0016604 nuclear body; GO:0016605 PML body; GO:0016925 protein sumoylation; GO:0019233 sensory perception of pain; GO:0019789 SUMO transferase activity; GO:0030163 protein catabolic process; GO:0030182 neuron differentiation; GO:0030425 dendrite; GO:0030904 retromer complex; GO:0030915 Smc5-Smc6 complex; GO:0031093 platelet alpha granule lumen; GO:0031398 positive regulation of protein ubiquitination; GO:0031625 ubiquitin protein ligase binding; GO:0032204 regulation of telomere maintenance; GO:0032922 circadian regulation of gene expression; GO:0032991 protein-containing complex; GO:0033234 negative regulation of protein sumoylation; GO:0034314 Arp2/3 complex-mediated actin nucleation; GO:0034644 cellular response to UV; GO:0042147 retrograde transport, endosome to Golgi; GO:0042752 regulation of circadian rhythm; GO:0042802 identical protein binding; GO:0042826 histone deacetylase binding; GO:0042981 regulation of apoptotic process; GO:0043015 gamma-tubulin binding; GO:0043066 negative regulation of apoptotic process; GO:0043406 positive regulation of MAP kinase activity; GO:0043524 negative regulation of neuron apoptotic process; GO:0045211 postsynaptic membrane; GO:0045746 negative regulation of Notch signaling pathway; GO:0045787 positive regulation of cell cycle; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046983 protein dimerization activity; GO:0048011 neurotrophin TRK receptor signaling pathway; GO:0048471 perinuclear region of cytoplasm; GO:0048666 neuron development; GO:0048675 axon extension; GO:0048854 brain morphogenesis; GO:0048871 multicellular organismal-level homeostasis; GO:0050680 negative regulation of epithelial cell proliferation; GO:0051127 positive regulation of actin nucleation; GO:0051443 positive regulation of ubiquitin-protein transferase activity; GO:0070294 renal sodium ion absorption; GO:0070534 protein K63-linked ubiquitination; GO:0071478 cellular response to radiation; GO:0071514 genomic imprinting; GO:0072331 signal transduction by p53 class mediator; GO:0072711 cellular response to hydroxyurea; GO:0089720 caspase binding; GO:0090190 positive regulation of branching involved in ureteric bud morphogenesis; GO:0090312 positive regulation of protein deacetylation; GO:0090398 cellular senescence; GO:0140297 DNA-binding transcription factor binding; GO:0140588 chromatin looping; GO:1900181 negative regulation of protein localization to nucleus; GO:1901984 negative regulation of protein acetylation; GO:1902236 negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway; GO:1990841 promoter-specific chromatin binding; GO:2000042 negative regulation of double-strand break repair via homologous recombination; GO:2001235 positive regulation of apoptotic signaling pathway
KEGG
KO: K24127 | Pathway: 04722 | BRITE: 00001, 04990
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.