PaHa01g15880.1

Record overview

Feature identity

Identifier: PaHa01g15880.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 306 bp
Genomic location: 1:25,824,599–25,825,849
Strand: +

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa01g15880

eggNOG: Preferred name: LOC108988117 | Seed ortholog: 337451.A0A443PID9 | COG: S | eggNOG OG: Myb_DNA-binding@131567|uI-23, Myb_DNA-binding@2759|yY-24, Myb_DNA-binding@58023|Lhv-44
Gene Ontology: GO:0000976 transcription cis-regulatory region binding; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0006355 regulation of DNA-templated transcription; GO:0007623 circadian rhythm; GO:0009408 response to heat; GO:0009409 response to cold; GO:0009637 response to blue light; GO:0009734 auxin-activated signaling pathway; GO:0009845 seed germination; GO:0009909 regulation of flower development; GO:0010099 regulation of photomorphogenesis; GO:0010114 response to red light; GO:0010378 temperature compensation of the circadian clock; GO:0010468 regulation of gene expression; GO:0010600 regulation of auxin biosynthetic process; GO:0010628 positive regulation of gene expression; GO:0032922 circadian regulation of gene expression; GO:0042752 regulation of circadian rhythm; GO:0042753 positive regulation of circadian rhythm; GO:0042754 negative regulation of circadian rhythm; GO:0043153 entrainment of circadian clock by photoperiod; GO:0043254 regulation of protein-containing complex assembly; GO:0043565 sequence-specific DNA binding; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048512 circadian behavior; GO:0048573 photoperiodism, flowering; GO:0048574 long-day photoperiodism, flowering; GO:1905301 regulation of macropinocytosis; GO:2000024 regulation of leaf development; GO:2000028 regulation of photoperiodism, flowering
KEGG: EC: ec:3.4.21.102 | KO: K03797, K11314, K12133, K12134, K15127 | Pathway: 04712 | BRITE: 00001, 01000, 01002, 03000, 03021, 03036

Feature identity

Functional evidence

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