Feature identity
- Identifier
- PaHa05g08850.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,877 bp
- Genomic location
- 5:20,280,560–20,289,785
- Strand
- +
Hass · mRNA
PaHa05g08850.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,877
- bp
- 5:20,280,560–20,289,785
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g08850
- eggNOG
- Preferred name: LHW | Seed ortholog: 337451.A0A3S3NR84 | COG: S | eggNOG OG: bHLH-MYC_N@131567|A-1*, bHLH-MYC_N@2759|B-2, bHLH-MYC_N@3193|m-7, bHLH-MYC_N@3398|AT-9
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0010078 maintenance of root meristem identity; GO:0010089 xylem development; GO:0010479 stele development; GO:0042803 protein homodimerization activity; GO:0045893 positive regulation of DNA-templated transcription; GO:0048364 root development
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g08850.1-protein
derives_frommRNAPaHa05g08850.1
mRNAPaHa05g08850.1
part_ofgenePaHa05g08850
CDS
part_ofPaHa05g08850.1-CDS-5-1787993825:20280560..20280654mRNAPaHa05g08850.1
CDS
part_ofPaHa05g08850.1-CDS-5-1787993825:20280824..20281045mRNAPaHa05g08850.1
CDS
part_ofPaHa05g08850.1-CDS-5-1787993825:20281215..20281296mRNAPaHa05g08850.1
CDS
part_ofPaHa05g08850.1-CDS-5-1787993825:20282315..20282356mRNAPaHa05g08850.1
CDS
part_ofPaHa05g08850.1-CDS-5-1787993825:20282472..20282531mRNAPaHa05g08850.1
CDS
part_ofPaHa05g08850.1-CDS-5-1787993825:20282784..20282804mRNAPaHa05g08850.1
CDS
part_ofPaHa05g08850.1-CDS-5-1787993825:20282886..20284691mRNAPaHa05g08850.1
CDS
part_ofPaHa05g08850.1-CDS-5-1787993825:20284799..20284906mRNAPaHa05g08850.1
CDS
part_ofPaHa05g08850.1-CDS-5-1787993825:20287292..20287432mRNAPaHa05g08850.1
CDS
part_ofPaHa05g08850.1-CDS-5-1787993825:20287502..20287627mRNAPaHa05g08850.1
CDS
part_ofPaHa05g08850.1-CDS-5-1787993825:20289612..20289785mRNAPaHa05g08850.1
exon
part_ofPaHa05g08850.1-exon-5-1787993825:20280560..20280654mRNAPaHa05g08850.1
exon
part_ofPaHa05g08850.1-exon-5-1787993825:20280824..20281045mRNAPaHa05g08850.1
exon
part_ofPaHa05g08850.1-exon-5-1787993825:20281215..20281296mRNAPaHa05g08850.1
exon
part_ofPaHa05g08850.1-exon-5-1787993825:20282315..20282356mRNAPaHa05g08850.1
exon
part_ofPaHa05g08850.1-exon-5-1787993825:20282472..20282531mRNAPaHa05g08850.1
exon
part_ofPaHa05g08850.1-exon-5-1787993825:20282784..20282804mRNAPaHa05g08850.1
exon
part_ofPaHa05g08850.1-exon-5-1787993825:20282886..20284691mRNAPaHa05g08850.1
exon
part_ofPaHa05g08850.1-exon-5-1787993825:20284799..20284906mRNAPaHa05g08850.1
exon
part_ofPaHa05g08850.1-exon-5-1787993825:20287292..20287432mRNAPaHa05g08850.1
exon
part_ofPaHa05g08850.1-exon-5-1787993825:20287502..20287627mRNAPaHa05g08850.1
exon
part_ofPaHa05g08850.1-exon-5-1787993825:20289612..20289785mRNAPaHa05g08850.1
