Feature identity
- Identifier
- PaHa05g05660.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 4,134 bp
- Genomic location
- 5:10,448,828–10,472,480
- Strand
- +
Hass · mRNA
PaHa05g05660.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 4,134
- bp
- 5:10,448,828–10,472,480
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g05660
- eggNOG
- Preferred name: SYN4 | Seed ortholog: 337451.A0A3S3QG28 | COG: S | eggNOG OG: Rad21_Rec8@131567|AQ-7, Rad21_Rec8@33090|Ya-23, Rad21_Rec8_N@131567|A-1*, Rad21_Rec8_N@2759|Ae-8, Rad21_Rec8_N@33090|NW-16
- Gene Ontology
- GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003684 damaged DNA binding; GO:0003690 double-stranded DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006302 double-strand break repair; GO:0007062 sister chromatid cohesion; GO:0019901 protein kinase binding; GO:0043565 sequence-specific DNA binding; GO:0061776 ATP-dependent topological DNA co-entrapment activity; GO:0070601 centromeric sister chromatid cohesion; GO:0106222 lncRNA binding; GO:0140297 DNA-binding transcription factor binding
- KEGG
- KO: K06670 | Pathway: 04110, 04111, 04113 | BRITE: 00001, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g05660.1-protein
derives_frommRNAPaHa05g05660.1
mRNAPaHa05g05660.1
part_ofgenePaHa05g05660
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10448828..10448951mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10449580..10449841mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10449932..10450029mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10450132..10450181mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10451042..10451103mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10457412..10458151mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10458269..10458763mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10458868..10459308mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10459493..10459637mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10459858..10459994mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10462976..10464183mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10469386..10469419mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10470349..10470457mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10470699..10470828mRNAPaHa05g05660.1
CDS
part_ofPaHa05g05660.1-CDS-5-1787993825:10472382..10472480mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10448828..10448951mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10449580..10449841mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10449932..10450029mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10450132..10450181mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10451042..10451103mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10457412..10458151mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10458269..10458763mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10458868..10459308mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10459493..10459637mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10459858..10459994mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10462976..10464183mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10469386..10469419mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10470349..10470457mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10470699..10470828mRNAPaHa05g05660.1
exon
part_ofPaHa05g05660.1-exon-5-1787993825:10472382..10472480mRNAPaHa05g05660.1
