Feature identity
- Identifier
- PaHa05g04810.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,422 bp
- Genomic location
- 5:8,316,526–8,324,390
- Strand
- −
Hass · mRNA
PaHa05g04810.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,422
- bp
- 5:8,316,526–8,324,390
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g04810
- eggNOG
- Preferred name: XBOS34 | Seed ortholog: 337451.A0A443NZS9 | COG: S | eggNOG OG: Ank_4@131567|PD-18, zf-C3HC4_3@131567|wB-20, zf-C3HC4_3@2759|AoX-23, zf-C3HC4_3@35493|ENn-32
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005764 lysosome; GO:0006355 regulation of DNA-templated transcription; GO:0008270 zinc ion binding; GO:0009409 response to cold; GO:0009651 response to salt stress; GO:0032836 glomerular basement membrane development; GO:0035023 regulation of Rho protein signal transduction; GO:0050832 defense response to fungus; GO:0071456 cellular response to hypoxia; GO:0072015 podocyte development
- KEGG
- EC: ec:5.6.2.3 | KO: K15362, K16748, K17592, K22808 | Pathway: 03440 | BRITE: 00001, 01000, 01009, 03037, 03400
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g04810.1-protein
derives_frommRNAPaHa05g04810.1
mRNAPaHa05g04810.1
part_ofgenePaHa05g04810
CDS
part_ofPaHa05g04810.1-CDS-5-1787993825:8316526..8317197mRNAPaHa05g04810.1
CDS
part_ofPaHa05g04810.1-CDS-5-1787993825:8317310..8317395mRNAPaHa05g04810.1
CDS
part_ofPaHa05g04810.1-CDS-5-1787993825:8319091..8319193mRNAPaHa05g04810.1
CDS
part_ofPaHa05g04810.1-CDS-5-1787993825:8322246..8322327mRNAPaHa05g04810.1
CDS
part_ofPaHa05g04810.1-CDS-5-1787993825:8322453..8322544mRNAPaHa05g04810.1
CDS
part_ofPaHa05g04810.1-CDS-5-1787993825:8322671..8322759mRNAPaHa05g04810.1
CDS
part_ofPaHa05g04810.1-CDS-5-1787993825:8322880..8322960mRNAPaHa05g04810.1
CDS
part_ofPaHa05g04810.1-CDS-5-1787993825:8323835..8323949mRNAPaHa05g04810.1
CDS
part_ofPaHa05g04810.1-CDS-5-1787993825:8324289..8324390mRNAPaHa05g04810.1
exon
part_ofPaHa05g04810.1-exon-5-1787993825:8316526..8317197mRNAPaHa05g04810.1
exon
part_ofPaHa05g04810.1-exon-5-1787993825:8317310..8317395mRNAPaHa05g04810.1
exon
part_ofPaHa05g04810.1-exon-5-1787993825:8319091..8319193mRNAPaHa05g04810.1
exon
part_ofPaHa05g04810.1-exon-5-1787993825:8322246..8322327mRNAPaHa05g04810.1
exon
part_ofPaHa05g04810.1-exon-5-1787993825:8322453..8322544mRNAPaHa05g04810.1
exon
part_ofPaHa05g04810.1-exon-5-1787993825:8322671..8322759mRNAPaHa05g04810.1
exon
part_ofPaHa05g04810.1-exon-5-1787993825:8322880..8322960mRNAPaHa05g04810.1
exon
part_ofPaHa05g04810.1-exon-5-1787993825:8323835..8323949mRNAPaHa05g04810.1
exon
part_ofPaHa05g04810.1-exon-5-1787993825:8324289..8324390mRNAPaHa05g04810.1
