Feature identity
- Identifier
- PaHa05g03530.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 486 bp
- Genomic location
- 5:5,742,434–5,745,748
- Strand
- −
Hass · mRNA
PaHa05g03530.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 486
- bp
- 5:5,742,434–5,745,748
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g03530
- eggNOG
- Preferred name: TCP2 | Seed ortholog: 337451.A0A3S3Q9D2 | COG: S | eggNOG OG: TCP@131567|A-1*, TCP@2759|F-3, TCP@3398|AO-8, TCP@58023|f-6
- Gene Ontology
- GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0008285 negative regulation of cell population proliferation; GO:0009637 response to blue light; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048366 leaf development; GO:2000306 positive regulation of photomorphogenesis
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g03530.1-protein
derives_frommRNAPaHa05g03530.1
mRNAPaHa05g03530.1
part_ofgenePaHa05g03530
CDS
part_ofPaHa05g03530.1-CDS-5-1787993825:5742434..5742562mRNAPaHa05g03530.1
CDS
part_ofPaHa05g03530.1-CDS-5-1787993825:5742908..5743152mRNAPaHa05g03530.1
CDS
part_ofPaHa05g03530.1-CDS-5-1787993825:5744655..5744747mRNAPaHa05g03530.1
CDS
part_ofPaHa05g03530.1-CDS-5-1787993825:5745730..5745748mRNAPaHa05g03530.1
exon
part_ofPaHa05g03530.1-exon-5-1787993825:5742434..5742562mRNAPaHa05g03530.1
exon
part_ofPaHa05g03530.1-exon-5-1787993825:5742908..5743152mRNAPaHa05g03530.1
exon
part_ofPaHa05g03530.1-exon-5-1787993825:5744655..5744747mRNAPaHa05g03530.1
exon
part_ofPaHa05g03530.1-exon-5-1787993825:5745730..5745748mRNAPaHa05g03530.1
