Feature identity
- Identifier
- PaHa05g01390.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,350 bp
- Genomic location
- 5:2,437,278–2,439,947
- Strand
- −
Hass · mRNA
PaHa05g01390.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,350
- bp
- 5:2,437,278–2,439,947
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g01390
- eggNOG
- Preferred name: LOC116202494 | Seed ortholog: 337451.A0A3S3NLF2 | COG: S | eggNOG OG: Myb_DNA-binding@131567|dl-20, Myb_DNA-binding@2759|pK-22, Myb_DNA-binding@3193|BFB-31, Myb_DNA-binding@33090|Adt-29, Myb_DNA-binding@3398|Fqg-39, Myb_DNA-binding@58023|EKH-37
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0007165 signal transduction; GO:0007623 circadian rhythm; GO:0009658 chloroplast organization; GO:0009910 negative regulation of flower development; GO:0010380 regulation of chlorophyll biosynthetic process; GO:0010638 positive regulation of organelle organization; GO:0045893 positive regulation of DNA-templated transcription; GO:1900056 negative regulation of leaf senescence
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g01390.1-protein
derives_frommRNAPaHa05g01390.1
mRNAPaHa05g01390.1
part_ofgenePaHa05g01390
CDS
part_ofPaHa05g01390.1-CDS-5-1787993825:2437278..2437634mRNAPaHa05g01390.1
CDS
part_ofPaHa05g01390.1-CDS-5-1787993825:2438241..2438694mRNAPaHa05g01390.1
CDS
part_ofPaHa05g01390.1-CDS-5-1787993825:2438789..2438975mRNAPaHa05g01390.1
CDS
part_ofPaHa05g01390.1-CDS-5-1787993825:2439275..2439311mRNAPaHa05g01390.1
CDS
part_ofPaHa05g01390.1-CDS-5-1787993825:2439421..2439497mRNAPaHa05g01390.1
CDS
part_ofPaHa05g01390.1-CDS-5-1787993825:2439710..2439947mRNAPaHa05g01390.1
exon
part_ofPaHa05g01390.1-exon-5-1787993825:2437278..2437634mRNAPaHa05g01390.1
exon
part_ofPaHa05g01390.1-exon-5-1787993825:2438241..2438694mRNAPaHa05g01390.1
exon
part_ofPaHa05g01390.1-exon-5-1787993825:2438789..2438975mRNAPaHa05g01390.1
exon
part_ofPaHa05g01390.1-exon-5-1787993825:2439275..2439311mRNAPaHa05g01390.1
exon
part_ofPaHa05g01390.1-exon-5-1787993825:2439421..2439497mRNAPaHa05g01390.1
exon
part_ofPaHa05g01390.1-exon-5-1787993825:2439710..2439947mRNAPaHa05g01390.1
