Feature identity
- Identifier
- PaHa05g01000.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,320 bp
- Genomic location
- 5:1,685,461–1,687,126
- Strand
- −
Hass · mRNA
PaHa05g01000.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,320
- bp
- 5:1,685,461–1,687,126
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g01000
- eggNOG
- Preferred name: LOC104612105 | Seed ortholog: 337451.A0A3S3R9R9 | COG: S | eggNOG OG: TCP@131567|A-1*, TCP@2759|F-3, TCP@3398|LC-16, TCP@58023|g-6
- Gene Ontology
- GO:0001216 DNA-binding transcription activator activity; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009733 response to auxin; GO:0009793 embryo development ending in seed dormancy; GO:0010150 leaf senescence; GO:0048366 leaf development; GO:0048825 cotyledon development; GO:0048826 cotyledon morphogenesis; GO:1990837 sequence-specific double-stranded DNA binding
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g01000.1-protein
derives_frommRNAPaHa05g01000.1
mRNAPaHa05g01000.1
part_ofgenePaHa05g01000
CDS
part_ofPaHa05g01000.1-CDS-5-1787993825:1685461..1685477mRNAPaHa05g01000.1
CDS
part_ofPaHa05g01000.1-CDS-5-1787993825:1685555..1685814mRNAPaHa05g01000.1
CDS
part_ofPaHa05g01000.1-CDS-5-1787993825:1685948..1686987mRNAPaHa05g01000.1
CDS
part_ofPaHa05g01000.1-CDS-5-1787993825:1687124..1687126mRNAPaHa05g01000.1
exon
part_ofPaHa05g01000.1-exon-5-1787993825:1685461..1685477mRNAPaHa05g01000.1
exon
part_ofPaHa05g01000.1-exon-5-1787993825:1685555..1685814mRNAPaHa05g01000.1
exon
part_ofPaHa05g01000.1-exon-5-1787993825:1685948..1686987mRNAPaHa05g01000.1
exon
part_ofPaHa05g01000.1-exon-5-1787993825:1687124..1687126mRNAPaHa05g01000.1
