Feature identity
- Identifier
- PaHa05g00550.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 390 bp
- Genomic location
- 5:1,059,437–1,059,826
- Strand
- −
Hass · mRNA
PaHa05g00550.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 390
- bp
- 5:1,059,437–1,059,826
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g00550
- eggNOG
- Preferred name: SRD2 | Seed ortholog: 337451.A0A3S4PUQ5 | COG: S | eggNOG OG: SNAPC3@2759|A-1
- Gene Ontology
- GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000995 RNA polymerase III general transcription initiation factor activity; GO:0001006 RNA polymerase III type 3 promoter sequence-specific DNA binding; GO:0001046 core promoter sequence-specific DNA binding; GO:0003677 DNA binding; GO:0003681 bent DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009301 snRNA transcription; GO:0009926 auxin polar transport; GO:0009942 longitudinal axis specification; GO:0009945 radial axis specification; GO:0010014 meristem initiation; GO:0010311 lateral root formation; GO:0043565 sequence-specific DNA binding; GO:0043697 cell dedifferentiation; GO:0060184 cell cycle switching; GO:0071365 cellular response to auxin stimulus; GO:0071368 cellular response to cytokinin stimulus; GO:1905392 plant organ morphogenesis
- KEGG
- KO: K15210 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g00550.1-protein
derives_frommRNAPaHa05g00550.1
mRNAPaHa05g00550.1
part_ofgenePaHa05g00550
CDS
part_ofPaHa05g00550.1-CDS-5-1787993825:1059437..1059826mRNAPaHa05g00550.1
exon
part_ofPaHa05g00550.1-exon-5-1787993825:1059437..1059826mRNAPaHa05g00550.1
