Feature identity
- Identifier
- PaHa04g23560.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,191 bp
- Genomic location
- 4:57,608,409–57,622,947
- Strand
- +
Hass · mRNA
PaHa04g23560.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,191
- bp
- 4:57,608,409–57,622,947
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g23560
- eggNOG
- Preferred name: TGA1 | Seed ortholog: 337451.A0A3S3QUL8 | COG: S | eggNOG OG: DOG1@131567|A-1*, DOG1@2759|CF-9, bZIP_1@131567|B-2, bZIP_1@35493|AEr-24
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005516 calmodulin binding; GO:0005634 nucleus; GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway; GO:0042742 defense response to bacterium; GO:0043565 sequence-specific DNA binding
- KEGG
- KO: K14431 | Pathway: 04075 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g23560.1-protein
derives_frommRNAPaHa04g23560.1
mRNAPaHa04g23560.1
part_ofgenePaHa04g23560
CDS
part_ofPaHa04g23560.1-CDS-4-1787993825:57608409..57608468mRNAPaHa04g23560.1
CDS
part_ofPaHa04g23560.1-CDS-4-1787993825:57614028..57614045mRNAPaHa04g23560.1
CDS
part_ofPaHa04g23560.1-CDS-4-1787993825:57615177..57615341mRNAPaHa04g23560.1
CDS
part_ofPaHa04g23560.1-CDS-4-1787993825:57615439..57615513mRNAPaHa04g23560.1
CDS
part_ofPaHa04g23560.1-CDS-4-1787993825:57616397..57616456mRNAPaHa04g23560.1
CDS
part_ofPaHa04g23560.1-CDS-4-1787993825:57616555..57616632mRNAPaHa04g23560.1
CDS
part_ofPaHa04g23560.1-CDS-4-1787993825:57616716..57616788mRNAPaHa04g23560.1
CDS
part_ofPaHa04g23560.1-CDS-4-1787993825:57618842..57619113mRNAPaHa04g23560.1
CDS
part_ofPaHa04g23560.1-CDS-4-1787993825:57620076..57620312mRNAPaHa04g23560.1
CDS
part_ofPaHa04g23560.1-CDS-4-1787993825:57622795..57622947mRNAPaHa04g23560.1
exon
part_ofPaHa04g23560.1-exon-4-1787993825:57608409..57608468mRNAPaHa04g23560.1
exon
part_ofPaHa04g23560.1-exon-4-1787993825:57614028..57614045mRNAPaHa04g23560.1
exon
part_ofPaHa04g23560.1-exon-4-1787993825:57615177..57615341mRNAPaHa04g23560.1
exon
part_ofPaHa04g23560.1-exon-4-1787993825:57615439..57615513mRNAPaHa04g23560.1
exon
part_ofPaHa04g23560.1-exon-4-1787993825:57616397..57616456mRNAPaHa04g23560.1
exon
part_ofPaHa04g23560.1-exon-4-1787993825:57616555..57616632mRNAPaHa04g23560.1
exon
part_ofPaHa04g23560.1-exon-4-1787993825:57616716..57616788mRNAPaHa04g23560.1
exon
part_ofPaHa04g23560.1-exon-4-1787993825:57618842..57619113mRNAPaHa04g23560.1
exon
part_ofPaHa04g23560.1-exon-4-1787993825:57620076..57620312mRNAPaHa04g23560.1
exon
part_ofPaHa04g23560.1-exon-4-1787993825:57622795..57622947mRNAPaHa04g23560.1
