Feature identity
- Identifier
- PaHa04g22980.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,428 bp
- Genomic location
- 4:56,979,726–56,992,677
- Strand
- −
Hass · mRNA
PaHa04g22980.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,428
- bp
- 4:56,979,726–56,992,677
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g22980
- eggNOG
- Preferred name: MYB39 | Seed ortholog: 337451.A0A443PGL3 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@3193|HJd-40, Myb_DNA-binding@33090|FSl-38, Myb_DNA-binding@35493|GNw-39, Myb_DNA-binding@58023|Miz-45
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0008150 biological_process; GO:0010345 suberin biosynthetic process; GO:0045723 positive regulation of fatty acid biosynthetic process; GO:0071365 cellular response to auxin stimulus; GO:1901332 negative regulation of lateral root development
- KEGG
- KO: K09422 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g22980.1-protein
derives_frommRNAPaHa04g22980.1
mRNAPaHa04g22980.1
part_ofgenePaHa04g22980
CDS
part_ofPaHa04g22980.1-CDS-4-1787993825:56979726..56979921mRNAPaHa04g22980.1
CDS
part_ofPaHa04g22980.1-CDS-4-1787993825:56980022..56980372mRNAPaHa04g22980.1
CDS
part_ofPaHa04g22980.1-CDS-4-1787993825:56991576..56992193mRNAPaHa04g22980.1
CDS
part_ofPaHa04g22980.1-CDS-4-1787993825:56992298..56992427mRNAPaHa04g22980.1
CDS
part_ofPaHa04g22980.1-CDS-4-1787993825:56992545..56992677mRNAPaHa04g22980.1
exon
part_ofPaHa04g22980.1-exon-4-1787993825:56979726..56979921mRNAPaHa04g22980.1
exon
part_ofPaHa04g22980.1-exon-4-1787993825:56980022..56980372mRNAPaHa04g22980.1
exon
part_ofPaHa04g22980.1-exon-4-1787993825:56991576..56992193mRNAPaHa04g22980.1
exon
part_ofPaHa04g22980.1-exon-4-1787993825:56992298..56992427mRNAPaHa04g22980.1
exon
part_ofPaHa04g22980.1-exon-4-1787993825:56992545..56992677mRNAPaHa04g22980.1
