Hass · mRNA

PaHa04g22400.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

510
bp
4:56,434,162–56,438,462
genomic location
Record overview

Feature identity

Identifier
PaHa04g22400.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
510 bp
Genomic location
4:56,434,162–56,438,462
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: MYB98 | Seed ortholog: 337451.A0A443PGQ5 | eggNOG OG: Myb_DNA-binding@131567|ACl-25
Gene Ontology
GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009553 embryo sac development; GO:0009960 endosperm development; GO:0010183 pollen tube guidance; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0010262 somatic embryogenesis; GO:0010439 regulation of glucosinolate biosynthetic process; GO:0043565 sequence-specific DNA binding; GO:0045691 regulation of embryo sac central cell differentiation; GO:0045697 regulation of synergid differentiation; GO:0045723 positive regulation of fatty acid biosynthetic process; GO:0045893 positive regulation of DNA-templated transcription; GO:0045995 regulation of embryonic development; GO:0051302 regulation of cell division; GO:0055089 fatty acid homeostasis; GO:1904095 negative regulation of endosperm development; GO:2000014 regulation of endosperm development; GO:2000034 regulation of seed maturation; GO:2000692 negative regulation of seed maturation; GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process
KEGG
KO: K09420, K09422, K09425, K21769 | BRITE: 00001, 03000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa04g22400.1-CDS-4-1787993825:56434162..56434276
part_of
CDSPaHa04g22400.1-CDS-4-1787993825:56438068..56438462
part_of
exonPaHa04g22400.1-exon-4-1787993825:56434162..56434276
part_of
exonPaHa04g22400.1-exon-4-1787993825:56438068..56438462
part_of