Hass · mRNA

PaHa04g22130.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,446
bp
4:56,051,624–56,068,237
genomic location
Record overview

Feature identity

Identifier
PaHa04g22130.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,446 bp
Genomic location
4:56,051,624–56,068,237
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: ATJ1 | Seed ortholog: 337451.A0A3S3NZR8 | COG: COG0484 | eggNOG OG: DnaJ@131567|DhA-24!, DnaJ_C@131221|DlS-29, DnaJ_C@131567|eM-17, DnaJ_CXXCXGXG@131567|G-3!
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000740 nuclear membrane fusion; GO:0001671 ATPase activator activity; GO:0002119 nematode larval development; GO:0005113 patched binding; GO:0005133 type II interferon receptor binding; GO:0005515 protein binding; GO:0005739 mitochondrion; GO:0006264 mitochondrial DNA replication; GO:0006457 protein folding; GO:0006458 'de novo' protein folding; GO:0006515 protein quality control for misfolded or incompletely synthesized proteins; GO:0006915 apoptotic process; GO:0006924 activation-induced cell death of T cells; GO:0007005 mitochondrion organization; GO:0007264 small GTPase-mediated signal transduction; GO:0007528 neuromuscular junction development; GO:0008270 zinc ion binding; GO:0008285 negative regulation of cell population proliferation; GO:0009408 response to heat; GO:0009553 embryo sac development; GO:0009558 embryo sac cellularization; GO:0009792 embryo development ending in birth or egg hatching; GO:0010197 polar nucleus fusion; GO:0010198 synergid death; GO:0019901 protein kinase binding; GO:0030544 Hsp70 protein binding; GO:0030695 GTPase regulator activity; GO:0030971 receptor tyrosine kinase binding; GO:0031398 positive regulation of protein ubiquitination; GO:0033077 T cell differentiation in thymus; GO:0034341 response to type II interferon; GO:0042026 protein refolding; GO:0042102 positive regulation of T cell proliferation; GO:0043065 positive regulation of apoptotic process; GO:0043066 negative regulation of apoptotic process; GO:0043069 negative regulation of programmed cell death; GO:0043124 negative regulation of canonical NF-kappaB signal transduction; GO:0044183 protein folding chaperone; GO:0044877 protein-containing complex binding; GO:0045879 negative regulation of smoothened signaling pathway; GO:0050821 protein stabilization; GO:0051059 NF-kappaB binding; GO:0060336 negative regulation of type II interferon-mediated signaling pathway; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0071340 skeletal muscle acetylcholine-gated channel clustering; GO:0090398 cellular senescence; GO:0106137 IkappaB kinase complex binding; GO:0140297 DNA-binding transcription factor binding; GO:0140662 ATP-dependent protein folding chaperone
KEGG
KO: K03686 | Pathway: 05203 | BRITE: 00001, 03029, 03110
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa04g22130.1-CDS-4-1787993825:56051624..56051783
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56053527..56053619
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56053796..56053887
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56054564..56054647
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56054899..56054937
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56055122..56055241
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56055341..56055382
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56057304..56057391
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56059837..56059901
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56060060..56060122
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56060289..56060361
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56062573..56062664
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56063023..56063094
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56065814..56065870
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56066431..56066479
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56066578..56066647
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56067059..56067148
part_of
CDSPaHa04g22130.1-CDS-4-1787993825:56068141..56068237
part_of
exonPaHa04g22130.1-exon-4-1787993825:56051624..56051783
part_of
exonPaHa04g22130.1-exon-4-1787993825:56053527..56053619
part_of
exonPaHa04g22130.1-exon-4-1787993825:56053796..56053887
part_of
exonPaHa04g22130.1-exon-4-1787993825:56054564..56054647
part_of
exonPaHa04g22130.1-exon-4-1787993825:56054899..56054937
part_of
exonPaHa04g22130.1-exon-4-1787993825:56055122..56055241
part_of
exonPaHa04g22130.1-exon-4-1787993825:56055341..56055382
part_of
exonPaHa04g22130.1-exon-4-1787993825:56057304..56057391
part_of
exonPaHa04g22130.1-exon-4-1787993825:56059837..56059901
part_of
exonPaHa04g22130.1-exon-4-1787993825:56060060..56060122
part_of
exonPaHa04g22130.1-exon-4-1787993825:56060289..56060361
part_of
exonPaHa04g22130.1-exon-4-1787993825:56062573..56062664
part_of
exonPaHa04g22130.1-exon-4-1787993825:56063023..56063094
part_of
exonPaHa04g22130.1-exon-4-1787993825:56065814..56065870
part_of
exonPaHa04g22130.1-exon-4-1787993825:56066431..56066479
part_of
exonPaHa04g22130.1-exon-4-1787993825:56066578..56066647
part_of
exonPaHa04g22130.1-exon-4-1787993825:56067059..56067148
part_of
exonPaHa04g22130.1-exon-4-1787993825:56068141..56068237
part_of