Feature identity
- Identifier
- PaHa04g21540.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,239 bp
- Genomic location
- 4:55,276,165–55,278,805
- Strand
- −
Hass · mRNA
PaHa04g21540.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,239
- bp
- 4:55,276,165–55,278,805
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g21540
- eggNOG
- Preferred name: LOC104605831 | Seed ortholog: 337451.A0A3S3N0V1 | COG: S | eggNOG OG: Patatin@131567|Bo-9, Patatin@1437183|VQt-52!, Patatin@3193|Rio-45, Patatin@3398|UzC-51, Patatin@35493|Kdi-36
- Gene Ontology
- GO:0005515 protein binding; GO:0005737 cytoplasm; GO:0005777 peroxisome; GO:0006629 lipid metabolic process; GO:0009507 chloroplast; GO:0009626 plant-type hypersensitive response; GO:0012501 programmed cell death; GO:0016020 membrane; GO:0016298 lipase activity; GO:0031408 oxylipin biosynthetic process; GO:0042802 identical protein binding; GO:0046686 response to cadmium ion; GO:0051607 defense response to virus; GO:0071456 cellular response to hypoxia
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g21540.1-protein
derives_frommRNAPaHa04g21540.1
mRNAPaHa04g21540.1
part_ofgenePaHa04g21540
CDS
part_ofPaHa04g21540.1-CDS-4-1787993825:55276165..55276252mRNAPaHa04g21540.1
CDS
part_ofPaHa04g21540.1-CDS-4-1787993825:55276350..55276525mRNAPaHa04g21540.1
CDS
part_ofPaHa04g21540.1-CDS-4-1787993825:55276638..55276940mRNAPaHa04g21540.1
CDS
part_ofPaHa04g21540.1-CDS-4-1787993825:55277103..55277264mRNAPaHa04g21540.1
CDS
part_ofPaHa04g21540.1-CDS-4-1787993825:55278017..55278203mRNAPaHa04g21540.1
CDS
part_ofPaHa04g21540.1-CDS-4-1787993825:55278320..55278501mRNAPaHa04g21540.1
CDS
part_ofPaHa04g21540.1-CDS-4-1787993825:55278665..55278805mRNAPaHa04g21540.1
exon
part_ofPaHa04g21540.1-exon-4-1787993825:55276165..55276252mRNAPaHa04g21540.1
exon
part_ofPaHa04g21540.1-exon-4-1787993825:55276350..55276525mRNAPaHa04g21540.1
exon
part_ofPaHa04g21540.1-exon-4-1787993825:55276638..55276940mRNAPaHa04g21540.1
exon
part_ofPaHa04g21540.1-exon-4-1787993825:55277103..55277264mRNAPaHa04g21540.1
exon
part_ofPaHa04g21540.1-exon-4-1787993825:55278017..55278203mRNAPaHa04g21540.1
exon
part_ofPaHa04g21540.1-exon-4-1787993825:55278320..55278501mRNAPaHa04g21540.1
exon
part_ofPaHa04g21540.1-exon-4-1787993825:55278665..55278805mRNAPaHa04g21540.1
