Feature identity
- Identifier
- PaHa04g21120.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 939 bp
- Genomic location
- 4:54,404,364–54,411,717
- Strand
- +
Hass · mRNA
PaHa04g21120.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 939
- bp
- 4:54,404,364–54,411,717
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa04g21120
- eggNOG
- Preferred name: LOC108988944 | Seed ortholog: 337451.A0A3S3N0X4 | COG: S | eggNOG OG: TRAM_LAG1_CLN8@131221|Ais-29, TRAM_LAG1_CLN8@131567|A-1*, TRAM_LAG1_CLN8@2759|cQ-22
- Gene Ontology
- GO:0002238 response to molecule of fungal origin; GO:0005634 nucleus; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005794 Golgi apparatus; GO:0005886 plasma membrane; GO:0006665 sphingolipid metabolic process; GO:0010256 endomembrane system organization; GO:0042759 long-chain fatty acid biosynthetic process; GO:0046513 ceramide biosynthetic process; GO:0050291 sphingosine N-acyltransferase activity
- KEGG
- EC: ec:2.3.1.291, ec:2.3.1.297, ec:2.3.1.298 | KO: K04709, K05613, K23727, K24621, K24622 | Pathway: 00600, 01100, 04071 | Module: M00094, M00099 | BRITE: 00001, 01000, 02000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa04g21120.1-protein
derives_frommRNAPaHa04g21120.1
mRNAPaHa04g21120.1
part_ofgenePaHa04g21120
CDS
part_ofPaHa04g21120.1-CDS-4-1787993825:54404364..54404471mRNAPaHa04g21120.1
CDS
part_ofPaHa04g21120.1-CDS-4-1787993825:54405784..54405992mRNAPaHa04g21120.1
CDS
part_ofPaHa04g21120.1-CDS-4-1787993825:54408496..54408651mRNAPaHa04g21120.1
CDS
part_ofPaHa04g21120.1-CDS-4-1787993825:54409810..54409995mRNAPaHa04g21120.1
CDS
part_ofPaHa04g21120.1-CDS-4-1787993825:54410087..54410265mRNAPaHa04g21120.1
CDS
part_ofPaHa04g21120.1-CDS-4-1787993825:54411422..54411440mRNAPaHa04g21120.1
CDS
part_ofPaHa04g21120.1-CDS-4-1787993825:54411505..54411535mRNAPaHa04g21120.1
CDS
part_ofPaHa04g21120.1-CDS-4-1787993825:54411667..54411717mRNAPaHa04g21120.1
exon
part_ofPaHa04g21120.1-exon-4-1787993825:54404364..54404471mRNAPaHa04g21120.1
exon
part_ofPaHa04g21120.1-exon-4-1787993825:54405784..54405992mRNAPaHa04g21120.1
exon
part_ofPaHa04g21120.1-exon-4-1787993825:54408496..54408651mRNAPaHa04g21120.1
exon
part_ofPaHa04g21120.1-exon-4-1787993825:54409810..54409995mRNAPaHa04g21120.1
exon
part_ofPaHa04g21120.1-exon-4-1787993825:54410087..54410265mRNAPaHa04g21120.1
exon
part_ofPaHa04g21120.1-exon-4-1787993825:54411422..54411440mRNAPaHa04g21120.1
exon
part_ofPaHa04g21120.1-exon-4-1787993825:54411505..54411535mRNAPaHa04g21120.1
exon
part_ofPaHa04g21120.1-exon-4-1787993825:54411667..54411717mRNAPaHa04g21120.1
